Analysis of interatomic Contacts of Structural Units in PDB entry:
7VGE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VGE entry

There are 6 chains in PDB entry 7VGE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 140	LEU 342
B	PRO 140	LEU 342
C	PRO 140	LEU 342
D	PRO 140	PHE 341
E	PRO 140	GLU 340
F	PRO 140	PHE 341

There are 28 helices in PDB entry 7VGE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	142	147	Right-handed alpha
Helix 2	AA2	A	148	158	Right-handed alpha
Helix 3	AA3	A	197	201	Right-handed alpha
Helix 4	AA4	A	336	340	Right-handed 310
Helix 5	AA5	B	142	148	Right-handed alpha
Helix 6	AA6	B	148	158	Right-handed alpha
Helix 7	AA7	B	196	201	Right-handed alpha
Helix 8	AA8	B	247	251	Right-handed 310
Helix 9	AA9	B	336	338	Right-handed 310
Helix 10	AB1	C	142	148	Right-handed alpha
Helix 11	AB2	C	148	158	Right-handed alpha
Helix 12	AB3	C	197	201	Right-handed alpha
Helix 13	AB4	C	335	342	Right-handed alpha
Helix 14	AB5	D	142	148	Right-handed alpha
Helix 15	AB6	D	148	158	Right-handed alpha
Helix 16	AB7	D	197	201	Right-handed alpha
Helix 17	AB8	D	302	306	Right-handed 310
Helix 18	AB9	D	335	340	Right-handed alpha
Helix 19	AC1	E	143	148	Right-handed alpha
Helix 20	AC2	E	148	158	Right-handed alpha
Helix 21	AC3	E	197	201	Right-handed alpha
Helix 22	AC4	E	335	340	Right-handed alpha
Helix 23	AC5	F	142	147	Right-handed alpha
Helix 24	AC6	F	148	158	Right-handed alpha
Helix 25	AC7	F	197	201	Right-handed alpha
Helix 26	AC8	F	247	251	Right-handed 310
Helix 27	AC9	F	302	306	Right-handed 310
Helix 28	AD1	F	335	341	Right-handed alpha

There are 12 sheets in PDB entry 7VGE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	165	first strand
Strand 2	A	182	188	anti-parallel
Strand 3	A	192	196	anti-parallel
Strand 4	A	229	234	anti-parallel
Strand 5	A	215	224	anti-parallel
Strand 6	A	206	209	anti-parallel
Strand 7	A	161	165	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	257	259	anti-parallel
Strand 3	A	309	312	anti-parallel
Strand 4	A	317	324	anti-parallel
Strand 5	A	330	334	anti-parallel
Strand 6	A	295	297	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	165	first strand
Strand 2	B	182	188	anti-parallel
Strand 3	B	192	195	anti-parallel
Strand 4	B	229	234	anti-parallel
Strand 5	B	215	224	anti-parallel
Strand 6	B	205	209	anti-parallel
Strand 7	B	161	165	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	259	first strand
Strand 2	B	272	277	anti-parallel
Strand 3	B	295	297	anti-parallel
Strand 4	B	330	334	anti-parallel
Strand 5	B	317	322	anti-parallel
Strand 6	B	309	312	anti-parallel
Strand 7	B	256	259	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	217	first strand
Strand 2	C	207	210	anti-parallel
Strand 3	C	161	165	anti-parallel
Strand 4	C	181	186	anti-parallel
Strand 5	C	192	196	anti-parallel
Strand 6	C	229	233	anti-parallel
Strand 7	C	219	224	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	274	first strand
Strand 2	C	256	259	anti-parallel
Strand 3	C	309	312	anti-parallel
Strand 4	C	317	323	anti-parallel
Strand 5	C	330	334	anti-parallel
Strand 6	C	295	297	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	165	first strand
Strand 2	D	182	188	anti-parallel
Strand 3	D	192	196	anti-parallel
Strand 4	D	229	233	anti-parallel
Strand 5	D	215	224	anti-parallel
Strand 6	D	205	209	anti-parallel
Strand 7	D	161	165	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	273	first strand
Strand 2	D	257	259	anti-parallel
Strand 3	D	309	312	anti-parallel
Strand 4	D	317	321	anti-parallel
Strand 5	D	330	334	anti-parallel
Strand 6	D	295	297	anti-parallel
Strand 7	D	275	277	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	161	166	first strand
Strand 2	E	181	186	anti-parallel
Strand 3	E	192	196	anti-parallel
Strand 4	E	229	234	anti-parallel
Strand 5	E	215	224	anti-parallel
Strand 6	E	206	209	anti-parallel
Strand 7	E	161	166	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	274	first strand
Strand 2	E	256	259	anti-parallel
Strand 3	E	309	312	anti-parallel
Strand 4	E	317	321	anti-parallel
Strand 5	E	330	334	anti-parallel
Strand 6	E	295	297	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	215	217	first strand
Strand 2	F	206	209	anti-parallel
Strand 3	F	161	166	anti-parallel
Strand 4	F	183	186	anti-parallel
Strand 5	F	192	196	anti-parallel
Strand 6	F	229	233	anti-parallel
Strand 7	F	219	224	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	272	273	first strand
Strand 2	F	257	259	anti-parallel
Strand 3	F	309	312	anti-parallel
Strand 4	F	317	321	anti-parallel
Strand 5	F	330	334	anti-parallel
Strand 6	F	295	297	anti-parallel
Strand 7	F	275	277	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VGE

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VGE