Analysis of interatomic Contacts of Structural Units in PDB entry:
7VGF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VGF entry

There are 2 chains in PDB entry 7VGF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 132LEU 694
B
 ASP 132LEU 694
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 7VGF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
133 171Right-handed alpha
Helix 2
AA2
A
186 234Right-handed alpha
Helix 3
AA3
A
237 244Right-handed alpha
Helix 4
AA4
A
247 289Right-handed alpha
Helix 5
AA5
A
290 339Right-handed alpha
Helix 6
AA6
A
339 346Right-handed alpha
Helix 7
AA7
A
349 402Right-handed alpha
Helix 8
AA8
A
409 422Right-handed alpha
Helix 9
AA9
A
423 432Right-handed alpha
Helix 10
AB1
A
433 450Right-handed alpha
Helix 11
AB2
A
512 519Right-handed alpha
Helix 12
AB3
A
537 539Right-handed 310
Helix 13
AB4
A
540 547Right-handed alpha
Helix 14
AB5
A
562 568Right-handed alpha
Helix 15
AB6
A
574 585Right-handed alpha
Helix 16
AB7
A
587 594Right-handed alpha
Helix 17
AB8
A
610 626Right-handed alpha
Helix 18
AB9
A
640 656Right-handed alpha
Helix 19
AC1
A
666 671Right-handed alpha
Helix 20
AC2
A
689 693Right-handed 310
Helix 21
AC3
B
133 171Right-handed alpha
Helix 22
AC4
B
186 234Right-handed alpha
Helix 23
AC5
B
237 244Right-handed alpha
Helix 24
AC6
B
247 289Right-handed alpha
Helix 25
AC7
B
290 339Right-handed alpha
Helix 26
AC8
B
339 346Right-handed alpha
Helix 27
AC9
B
349 402Right-handed alpha
Helix 28
AD1
B
409 422Right-handed alpha
Helix 29
AD2
B
423 432Right-handed alpha
Helix 30
AD3
B
433 450Right-handed alpha
Helix 31
AD4
B
512 519Right-handed alpha
Helix 32
AD5
B
537 539Right-handed 310
Helix 33
AD6
B
540 547Right-handed alpha
Helix 34
AD7
B
562 568Right-handed alpha
Helix 35
AD8
B
574 585Right-handed alpha
Helix 36
AD9
B
587 594Right-handed alpha
Helix 37
AE1
B
610 626Right-handed alpha
Helix 38
AE2
B
640 656Right-handed alpha
Helix 39
AE3
B
666 671Right-handed alpha
Helix 40
AE4
B
689 693Right-handed 310
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There are 6 sheets in PDB entry 7VGF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 491first strand
Strand 2
A
473 479anti-parallel
Strand 3
A
526 531anti-parallel
Strand 4
A
534 535anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
548 551first strand
Strand 2
A
629 633parallel
Strand 3
A
659 663parallel
Strand 4
A
500 504parallel
Strand 5
A
675 680parallel
Strand 6
A
683 688anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
560 561first strand
Strand 2
A
601 602anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
488 491first strand
Strand 2
B
473 479anti-parallel
Strand 3
B
526 531anti-parallel
Strand 4
B
534 535anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
548 551first strand
Strand 2
B
629 633parallel
Strand 3
B
659 663parallel
Strand 4
B
500 504parallel
Strand 5
B
675 680parallel
Strand 6
B
683 688anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
560 561first strand
Strand 2
B
601 602anti-parallel
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