Analysis of interatomic Contacts of Structural Units in PDB entry:
7VGG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VGG entry

There are 2 chains in PDB entry 7VGG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 351	ALA 675
B	PRO 13	ASP 412

There are 7 helices in PDB entry 7VGG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	400	406	Right-handed alpha
Helix 2	AA2	B	62	65	Right-handed 310
Helix 3	AA3	B	95	99	Right-handed 310
Helix 4	AA4	B	115	118	Right-handed 310
Helix 5	AA5	B	167	170	Right-handed 310
Helix 6	AA6	B	271	274	Right-handed 310
Helix 7	AA7	B	324	328	Right-handed 310

There are 14 sheets in PDB entry 7VGG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	362	first strand
Strand 2	A	668	674	anti-parallel
Strand 3	A	658	663	anti-parallel
Strand 4	A	647	652	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	379	first strand
Strand 2	A	385	390	anti-parallel
Strand 3	A	394	399	anti-parallel
Strand 4	A	415	418	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	428	first strand
Strand 2	A	435	440	anti-parallel
Strand 3	A	445	449	anti-parallel
Strand 4	A	454	459	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	466	471	first strand
Strand 2	A	478	483	anti-parallel
Strand 3	A	487	492	anti-parallel
Strand 4	A	498	503	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	508	514	first strand
Strand 2	A	517	525	anti-parallel
Strand 3	A	530	534	anti-parallel
Strand 4	A	543	545	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	552	557	first strand
Strand 2	A	562	567	anti-parallel
Strand 3	A	571	576	anti-parallel
Strand 4	A	582	586	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	598	600	first strand
Strand 2	A	604	607	anti-parallel
Strand 3	A	613	618	anti-parallel
Strand 4	A	626	629	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	22	first strand
Strand 2	B	26	31	anti-parallel
Strand 3	B	35	40	anti-parallel
Strand 4	B	55	60	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	74	first strand
Strand 2	B	78	83	anti-parallel
Strand 3	B	88	93	anti-parallel
Strand 4	B	112	113	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	127	first strand
Strand 2	B	131	136	anti-parallel
Strand 3	B	141	145	anti-parallel
Strand 4	B	160	165	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	179	first strand
Strand 2	B	183	188	anti-parallel
Strand 3	B	194	197	anti-parallel
Strand 4	B	212	217	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	231	first strand
Strand 2	B	235	240	anti-parallel
Strand 3	B	246	249	anti-parallel
Strand 4	B	264	269	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	283	first strand
Strand 2	B	287	292	anti-parallel
Strand 3	B	297	301	anti-parallel
Strand 4	B	316	322	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	335	first strand
Strand 2	B	339	344	anti-parallel
Strand 3	B	349	353	anti-parallel
Strand 4	B	368	373	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VGG

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VGG