Analysis of interatomic Contacts of Structural Units in PDB entry:
7VGH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VGH entry

There are 3 chains in PDB entry 7VGH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 8	GLN 345
B	ASP 14	SER 453
B	LYS 455	ILE 1227

There are 62 helices in PDB entry 7VGH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	57	Right-handed alpha
Helix 2	AA2	A	75	80	Right-handed 310
Helix 3	AA3	A	121	126	Right-handed alpha
Helix 4	AA4	A	129	135	Right-handed alpha
Helix 5	AA5	A	147	151	Right-handed 310
Helix 6	AA6	A	163	168	Right-handed alpha
Helix 7	AA7	A	216	220	Right-handed 310
Helix 8	AA8	A	232	236	Right-handed 310
Helix 9	AA9	A	247	255	Right-handed alpha
Helix 10	AB1	A	315	342	Right-handed alpha
Helix 11	AB2	B	70	76	Right-handed 310
Helix 12	AB3	B	106	116	Right-handed alpha
Helix 13	AB4	B	118	131	Right-handed alpha
Helix 14	AB5	B	145	170	Right-handed alpha
Helix 15	AB6	B	171	175	Right-handed 310
Helix 16	AB7	B	190	194	Right-handed 310
Helix 17	AB8	B	243	248	Right-handed alpha
Helix 18	AB9	B	252	257	Right-handed alpha
Helix 19	AC1	B	289	293	Right-handed 310
Helix 20	AC2	B	313	317	Right-handed 310
Helix 21	AC3	B	333	364	Right-handed alpha
Helix 22	AC4	B	366	370	Right-handed 310
Helix 23	AC5	B	380	397	Right-handed alpha
Helix 24	AC6	B	406	420	Right-handed alpha
Helix 25	AC7	B	421	426	Right-handed 310
Helix 26	AC8	B	442	447	Right-handed 310
Helix 27	AC9	B	509	519	Right-handed alpha
Helix 28	AD1	B	521	526	Right-handed alpha
Helix 29	AD2	B	526	531	Right-handed alpha
Helix 30	AD3	B	552	564	Right-handed alpha
Helix 31	AD4	B	621	626	Right-handed alpha
Helix 32	AD5	B	635	649	Right-handed alpha
Helix 33	AD6	B	664	678	Right-handed alpha
Helix 34	AD7	B	685	692	Right-handed alpha
Helix 35	AD8	B	713	724	Right-handed alpha
Helix 36	AD9	B	737	746	Right-handed alpha
Helix 37	AE1	B	757	771	Right-handed alpha
Helix 38	AE2	B	803	810	Right-handed alpha
Helix 39	AE3	B	841	846	Right-handed alpha
Helix 40	AE4	B	848	857	Right-handed alpha
Helix 41	AE5	B	858	860	Right-handed 310
Helix 42	AE6	B	869	883	Right-handed alpha
Helix 43	AE7	B	897	904	Right-handed alpha
Helix 44	AE8	B	928	930	Right-handed 310
Helix 45	AE9	B	931	938	Right-handed alpha
Helix 46	AF1	B	938	958	Right-handed alpha
Helix 47	AF2	B	958	963	Right-handed alpha
Helix 48	AF3	B	963	969	Right-handed alpha
Helix 49	AF4	B	970	972	Right-handed 310
Helix 50	AF5	B	981	986	Right-handed alpha
Helix 51	AF6	B	994	1004	Right-handed alpha
Helix 52	AF7	B	1015	1018	Right-handed 310
Helix 53	AF8	B	1019	1024	Right-handed alpha
Helix 54	AF9	B	1029	1056	Right-handed alpha
Helix 55	AG1	B	1068	1079	Right-handed alpha
Helix 56	AG2	B	1082	1088	Right-handed alpha
Helix 57	AG3	B	1096	1118	Right-handed alpha
Helix 58	AG4	B	1135	1140	Right-handed alpha
Helix 59	AG5	B	1142	1156	Right-handed alpha
Helix 60	AG6	B	1157	1167	Right-handed alpha
Helix 61	AG7	B	1173	1181	Right-handed alpha
Helix 62	AG8	B	1218	1223	Right-handed alpha

There are 10 sheets in PDB entry 7VGH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	64	first strand
Strand 2	A	299	305	anti-parallel
Strand 3	A	108	115	anti-parallel
Strand 4	A	261	269	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	100	first strand
Strand 2	A	281	287	anti-parallel
Strand 3	A	174	179	anti-parallel
Strand 4	A	187	188	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	189	first strand
Strand 2	B	178	181	anti-parallel
Strand 3	B	199	203	anti-parallel
Strand 4	B	305	310	anti-parallel
Strand 5	B	212	217	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	241	first strand
Strand 2	B	223	227	anti-parallel
Strand 3	B	299	301	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	279	first strand
Strand 2	B	286	288	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	435	436	first strand
Strand 2	B	924	925	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	798	802	first strand
Strand 2	B	862	866	parallel
Strand 3	B	727	732	parallel
Strand 4	B	450	453	parallel
Strand 5	B	888	891	parallel
Strand 6	B	906	908	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	476	first strand
Strand 2	B	469	471	anti-parallel
Strand 3	B	700	706	anti-parallel
Strand 4	B	652	662	anti-parallel
Strand 5	B	613	620	anti-parallel
Strand 6	B	602	609	anti-parallel
Strand 7	B	589	594	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	539	first strand
Strand 2	B	548	549	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	568	572	first strand
Strand 2	B	577	581	anti-parallel
Strand 3	B	584	587	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VGH

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VGH