Analysis of interatomic Contacts of Structural Units in PDB entry:
7VGI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VGI entry

There are 3 chains in PDB entry 7VGI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 24	SER 354
B	SER 15	SER 453
B	LYS 455	ILE 1227

There are 68 helices in PDB entry 7VGI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	46	51	Right-handed alpha
Helix 2	AA2	A	52	57	Right-handed alpha
Helix 3	AA3	A	60	74	Right-handed alpha
Helix 4	AA4	A	89	95	Right-handed 310
Helix 5	AA5	A	131	136	Right-handed alpha
Helix 6	AA6	A	139	144	Right-handed alpha
Helix 7	AA7	A	148	152	Right-handed 310
Helix 8	AA8	A	154	160	Right-handed 310
Helix 9	AA9	A	206	211	Right-handed alpha
Helix 10	AB1	A	222	227	Right-handed alpha
Helix 11	AB2	A	239	243	Right-handed 310
Helix 12	AB3	A	250	253	Right-handed 310
Helix 13	AB4	A	254	262	Right-handed alpha
Helix 14	AB5	A	301	305	Right-handed 310
Helix 15	AB6	A	322	336	Right-handed alpha
Helix 16	AB7	A	346	351	Right-handed alpha
Helix 17	AB8	B	72	76	Right-handed 310
Helix 18	AB9	B	106	116	Right-handed alpha
Helix 19	AC1	B	118	131	Right-handed alpha
Helix 20	AC2	B	145	170	Right-handed alpha
Helix 21	AC3	B	171	173	Right-handed 310
Helix 22	AC4	B	190	194	Right-handed 310
Helix 23	AC5	B	245	250	Right-handed alpha
Helix 24	AC6	B	289	291	Right-handed 310
Helix 25	AC7	B	313	317	Right-handed 310
Helix 26	AC8	B	335	364	Right-handed alpha
Helix 27	AC9	B	380	390	Right-handed alpha
Helix 28	AD1	B	390	396	Right-handed alpha
Helix 29	AD2	B	397	399	Right-handed 310
Helix 30	AD3	B	404	409	Right-handed alpha
Helix 31	AD4	B	410	415	Right-handed alpha
Helix 32	AD5	B	416	421	Right-handed alpha
Helix 33	AD6	B	441	448	Right-handed 310
Helix 34	AD7	B	509	519	Right-handed alpha
Helix 35	AD8	B	524	531	Right-handed alpha
Helix 36	AD9	B	552	564	Right-handed alpha
Helix 37	AE1	B	621	626	Right-handed alpha
Helix 38	AE2	B	637	649	Right-handed alpha
Helix 39	AE3	B	664	678	Right-handed alpha
Helix 40	AE4	B	685	692	Right-handed alpha
Helix 41	AE5	B	714	724	Right-handed alpha
Helix 42	AE6	B	737	746	Right-handed alpha
Helix 43	AE7	B	757	765	Right-handed alpha
Helix 44	AE8	B	765	770	Right-handed alpha
Helix 45	AE9	B	803	810	Right-handed alpha
Helix 46	AF1	B	841	857	Right-handed alpha
Helix 47	AF2	B	858	860	Right-handed 310
Helix 48	AF3	B	869	881	Right-handed alpha
Helix 49	AF4	B	894	896	Right-handed 310
Helix 50	AF5	B	897	904	Right-handed alpha
Helix 51	AF6	B	928	930	Right-handed 310
Helix 52	AF7	B	931	938	Right-handed alpha
Helix 53	AF8	B	940	958	Right-handed alpha
Helix 54	AF9	B	958	963	Right-handed alpha
Helix 55	AG1	B	963	969	Right-handed alpha
Helix 56	AG2	B	970	972	Right-handed 310
Helix 57	AG3	B	994	1004	Right-handed alpha
Helix 58	AG4	B	1010	1015	Right-handed alpha
Helix 59	AG5	B	1016	1023	Right-handed 310
Helix 60	AG6	B	1034	1039	Right-handed alpha
Helix 61	AG7	B	1042	1056	Right-handed alpha
Helix 62	AG8	B	1068	1085	Right-handed alpha
Helix 63	AG9	B	1106	1115	Right-handed alpha
Helix 64	AH1	B	1135	1140	Right-handed alpha
Helix 65	AH2	B	1144	1156	Right-handed alpha
Helix 66	AH3	B	1161	1167	Right-handed alpha
Helix 67	AH4	B	1173	1181	Right-handed alpha
Helix 68	AH5	B	1218	1224	Right-handed alpha

There are 11 sheets in PDB entry 7VGI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	79	first strand
Strand 2	A	307	314	anti-parallel
Strand 3	A	118	125	anti-parallel
Strand 4	A	269	276	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	110	first strand
Strand 2	A	289	296	anti-parallel
Strand 3	A	182	187	anti-parallel
Strand 4	A	195	196	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	163	first strand
Strand 2	A	166	167	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	181	first strand
Strand 2	B	186	187	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	203	first strand
Strand 2	B	305	310	anti-parallel
Strand 3	B	212	217	anti-parallel
Strand 4	B	293	294	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	241	first strand
Strand 2	B	223	227	anti-parallel
Strand 3	B	299	301	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	279	first strand
Strand 2	B	286	288	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	435	436	first strand
Strand 2	B	924	925	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	799	802	first strand
Strand 2	B	863	866	parallel
Strand 3	B	727	731	parallel
Strand 4	B	450	453	parallel
Strand 5	B	888	892	parallel
Strand 6	B	906	909	parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	474	476	first strand
Strand 2	B	466	471	anti-parallel
Strand 3	B	699	706	anti-parallel
Strand 4	B	652	660	anti-parallel
Strand 5	B	614	620	anti-parallel
Strand 6	B	602	608	anti-parallel
Strand 7	B	584	594	anti-parallel
Strand 8	B	576	581	anti-parallel
Strand 9	B	568	572	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	539	first strand
Strand 2	B	548	549	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VGI

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VGI