Analysis of interatomic Contacts of Structural Units in PDB entry:
7VGJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VGJ entry

There are 2 chains in PDB entry 7VGJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 61ARG 1184
B
 THR 28SER 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 7VGJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
106 116Right-handed alpha
Helix 2
AA2
A
118 132Right-handed alpha
Helix 3
AA3
A
144 164Right-handed alpha
Helix 4
AA4
A
164 174Right-handed alpha
Helix 5
AA5
A
219 223Right-handed 310
Helix 6
AA6
A
244 248Right-handed 310
Helix 7
AA7
A
254 258Right-handed 310
Helix 8
AA8
A
318 322Right-handed 310
Helix 9
AA9
A
331 367Right-handed alpha
Helix 10
AB1
A
380 390Right-handed alpha
Helix 11
AB2
A
403 421Right-handed alpha
Helix 12
AB3
A
422 426Right-handed 310
Helix 13
AB4
A
443 447Right-handed 310
Helix 14
AB5
A
454 459Right-handed alpha
Helix 15
AB6
A
510 519Right-handed alpha
Helix 16
AB7
A
522 534Right-handed alpha
Helix 17
AB8
A
555 565Right-handed alpha
Helix 18
AB9
A
621 626Right-handed alpha
Helix 19
AC1
A
634 647Right-handed alpha
Helix 20
AC2
A
665 678Right-handed alpha
Helix 21
AC3
A
686 692Right-handed alpha
Helix 22
AC4
A
713 724Right-handed alpha
Helix 23
AC5
A
735 746Right-handed alpha
Helix 24
AC6
A
757 769Right-handed alpha
Helix 25
AC7
A
803 811Right-handed alpha
Helix 26
AC8
A
841 846Right-handed alpha
Helix 27
AC9
A
848 859Right-handed alpha
Helix 28
AD1
A
869 883Right-handed alpha
Helix 29
AD2
A
895 900Right-handed 310
Helix 30
AD3
A
917 922Right-handed alpha
Helix 31
AD4
A
931 936Right-handed alpha
Helix 32
AD5
A
939 969Right-handed alpha
Helix 33
AD6
A
970 973Right-handed 310
Helix 34
AD7
A
981 986Right-handed alpha
Helix 35
AD8
A
987 992Right-handed alpha
Helix 36
AD9
A
994 1004Right-handed alpha
Helix 37
AE1
A
1008 1015Right-handed alpha
Helix 38
AE2
A
1019 1025Right-handed alpha
Helix 39
AE3
A
1031 1056Right-handed alpha
Helix 40
AE4
A
1068 1073Right-handed alpha
Helix 41
AE5
A
1073 1092Right-handed alpha
Helix 42
AE6
A
1096 1117Right-handed alpha
Helix 43
AE7
A
1119 1124Right-handed alpha
Helix 44
AE8
A
1135 1140Right-handed alpha
Helix 45
AE9
A
1148 1171Right-handed alpha
Helix 46
AF1
A
1173 1181Right-handed alpha
Helix 47
AF2
B
49 62Right-handed alpha
Helix 48
AF3
B
64 77Right-handed alpha
Helix 49
AF4
B
94 98Right-handed 310
Helix 50
AF5
B
134 139Right-handed alpha
Helix 51
AF6
B
142 148Right-handed alpha
Helix 52
AF7
B
149 155Right-handed alpha
Helix 53
AF8
B
175 180Right-handed alpha
Helix 54
AF9
B
227 231Right-handed 310
Helix 55
AG1
B
242 246Right-handed 310
Helix 56
AG2
B
257 265Right-handed alpha
Helix 57
AG3
B
325 354Right-handed alpha
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There are 10 sheets in PDB entry 7VGJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 189first strand
Strand 2
A
178 181anti-parallel
Strand 3
A
199 201anti-parallel
Strand 4
A
306 312anti-parallel
Strand 5
A
211 212anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 189first strand
Strand 2
A
178 181anti-parallel
Strand 3
A
199 201anti-parallel
Strand 4
A
306 312anti-parallel
Strand 5
A
216 217anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 240first strand
Strand 2
A
224 227anti-parallel
Strand 3
A
299 300anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
799 802first strand
Strand 2
A
863 866parallel
Strand 3
A
727 731parallel
Strand 4
A
450 453parallel
Strand 5
A
888 892parallel
Strand 6
A
906 910parallel
Strand 7
A
924 926parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 471first strand
Strand 2
A
474 475anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 540first strand
Strand 2
A
547 549anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
569 570first strand
Strand 2
A
576 581anti-parallel
Strand 3
A
584 594anti-parallel
Strand 4
A
604 608anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
652 658first strand
Strand 2
A
699 706anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 82first strand
Strand 2
B
312 317anti-parallel
Strand 3
B
121 128anti-parallel
Strand 4
B
271 278anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 113first strand
Strand 2
B
292 300anti-parallel
Strand 3
B
185 191anti-parallel
Strand 4
B
197 199anti-parallel
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