Analysis of interatomic Contacts of Structural Units in PDB entry:
7VGM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VGM entry

There is 1 chain in PDB entry 7VGM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3PRO 573
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 7VGM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 13Right-handed 310
Helix 2
AA2
A
19 23Right-handed 310
Helix 3
AA3
A
24 46Right-handed alpha
Helix 4
AA4
A
49 57Right-handed alpha
Helix 5
AA5
A
66 75Right-handed alpha
Helix 6
AA6
A
76 78Right-handed 310
Helix 7
AA7
A
89 99Right-handed alpha
Helix 8
AA8
A
110 114Right-handed 310
Helix 9
AA9
A
121 128Right-handed alpha
Helix 10
AB1
A
130 134Right-handed 310
Helix 11
AB2
A
135 150Right-handed alpha
Helix 12
AB3
A
155 173Right-handed alpha
Helix 13
AB4
A
178 196Right-handed alpha
Helix 14
AB5
A
200 212Right-handed alpha
Helix 15
AB6
A
228 233Right-handed alpha
Helix 16
AB7
A
234 242Right-handed alpha
Helix 17
AB8
A
252 258Right-handed alpha
Helix 18
AB9
A
275 288Right-handed alpha
Helix 19
AC1
A
290 295Right-handed alpha
Helix 20
AC2
A
295 307Right-handed alpha
Helix 21
AC3
A
377 381Right-handed 310
Helix 22
AC4
A
382 390Right-handed alpha
Helix 23
AC5
A
440 444Right-handed 310
Helix 24
AC6
A
463 468Right-handed alpha
Helix 25
AC7
A
484 500Right-handed alpha
Helix 26
AC8
A
503 521Right-handed alpha
Helix 27
AC9
A
525 538Right-handed alpha
Helix 28
AD1
A
541 554Right-handed alpha
Helix 29
AD2
A
558 570Right-handed alpha
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There are 6 sheets in PDB entry 7VGM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 16first strand
Strand 2
A
80 84anti-parallel
Strand 3
A
101 104parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 226first strand
Strand 2
A
217 219anti-parallel
Strand 3
A
269 273parallel
Strand 4
A
247 250parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 352first strand
Strand 2
A
345 348anti-parallel
Strand 3
A
319 322anti-parallel
Strand 4
A
310 314anti-parallel
Strand 5
A
454 459anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 329first strand
Strand 2
A
335 340anti-parallel
Strand 3
A
366 368anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 400first strand
Strand 2
A
406 417anti-parallel
Strand 3
A
420 433anti-parallel
Strand 4
A
436 439anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 400first strand
Strand 2
A
406 417anti-parallel
Strand 3
A
420 433anti-parallel
Strand 4
A
446 449anti-parallel
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