Analysis of interatomic Contacts of Structural Units in PDB entry:
7VGN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VGN entry

There are 2 chains in PDB entry 7VGN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 338
B
 HIS -12ALA 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 7VGN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 28Right-handed alpha
Helix 2
AA2
A
33 44Right-handed alpha
Helix 3
AA3
A
45 47Right-handed 310
Helix 4
AA4
A
48 60Right-handed alpha
Helix 5
AA5
A
75 80Right-handed alpha
Helix 6
AA6
A
85 89Right-handed 310
Helix 7
AA7
A
91 93Right-handed 310
Helix 8
AA8
A
94 106Right-handed alpha
Helix 9
AA9
A
117 121Right-handed 310
Helix 10
AB1
A
185 194Right-handed alpha
Helix 11
AB2
A
202 210Right-handed 310
Helix 12
AB3
A
215 218Right-handed 310
Helix 13
AB4
A
219 228Right-handed alpha
Helix 14
AB5
A
257 275Right-handed alpha
Helix 15
AB6
A
319 327Right-handed 310
Helix 16
AB7
B
10 28Right-handed alpha
Helix 17
AB8
B
33 44Right-handed alpha
Helix 18
AB9
B
45 47Right-handed 310
Helix 19
AC1
B
48 60Right-handed alpha
Helix 20
AC2
B
75 80Right-handed alpha
Helix 21
AC3
B
85 89Right-handed 310
Helix 22
AC4
B
91 93Right-handed 310
Helix 23
AC5
B
94 106Right-handed alpha
Helix 24
AC6
B
117 121Right-handed 310
Helix 25
AC7
B
180 184Right-handed 310
Helix 26
AC8
B
185 193Right-handed alpha
Helix 27
AC9
B
217 228Right-handed alpha
Helix 28
AD1
B
257 275Right-handed alpha
Helix 29
AD2
B
319 327Right-handed 310
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There are 10 sheets in PDB entry 7VGN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 8first strand
Strand 2
A
66 70parallel
Strand 3
A
285 289anti-parallel
Strand 4
A
160 167anti-parallel
Strand 5
A
310 317anti-parallel
Strand 6
A
124 126anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 8first strand
Strand 2
A
66 70parallel
Strand 3
A
285 289anti-parallel
Strand 4
A
160 167anti-parallel
Strand 5
A
310 317anti-parallel
Strand 6
A
110 114anti-parallel
Strand 7
A
334 335parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 148first strand
Strand 2
A
294 297anti-parallel
Strand 3
A
173 177anti-parallel
Strand 4
A
276 279anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 199first strand
Strand 2
A
251 253anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 236first strand
Strand 2
A
243 244anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
-9 -3first strand
Strand 2
B
0 8anti-parallel
Strand 3
B
66 70parallel
Strand 4
B
285 289anti-parallel
Strand 5
B
160 167anti-parallel
Strand 6
B
310 317anti-parallel
Strand 7
B
124 126anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
-9 -3first strand
Strand 2
B
0 8anti-parallel
Strand 3
B
66 70parallel
Strand 4
B
285 289anti-parallel
Strand 5
B
160 167anti-parallel
Strand 6
B
310 317anti-parallel
Strand 7
B
110 114anti-parallel
Strand 8
B
334 335parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 148first strand
Strand 2
B
293 297anti-parallel
Strand 3
B
173 178anti-parallel
Strand 4
B
276 279anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 199first strand
Strand 2
B
251 253anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
235 236first strand
Strand 2
B
243 244anti-parallel
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