Analysis of interatomic Contacts of Structural Units in PDB entry:
7VGQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VGQ entry

There are 2 chains in PDB entry 7VGQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2SER 1816
B
 TYR 34SER 82
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 7VGQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 12Right-handed alpha
Helix 2
AA2
A
22 27Right-handed alpha
Helix 3
AA3
A
34 39Right-handed alpha
Helix 4
AA4
A
44 51Right-handed alpha
Helix 5
AA5
A
52 57Right-handed alpha
Helix 6
AA6
A
112 125Right-handed alpha
Helix 7
AA7
A
126 131Right-handed alpha
Helix 8
AA8
A
132 134Right-handed 310
Helix 9
AA9
A
156 164Right-handed alpha
Helix 10
AB1
A
166 175Right-handed alpha
Helix 11
AB2
A
184 192Right-handed alpha
Helix 12
AB3
A
200 205Right-handed 310
Helix 13
AB4
A
214 223Right-handed alpha
Helix 14
AB5
A
234 250Right-handed alpha
Helix 15
AB6
A
265 275Right-handed alpha
Helix 16
AB7
A
284 289Right-handed alpha
Helix 17
AB8
A
290 300Right-handed alpha
Helix 18
AB9
A
322 339Right-handed alpha
Helix 19
AC1
A
347 366Right-handed alpha
Helix 20
AC2
A
396 410Right-handed alpha
Helix 21
AC3
A
443 451Right-handed alpha
Helix 22
AC4
A
474 478Right-handed 310
Helix 23
AC5
A
483 499Right-handed alpha
Helix 24
AC6
A
574 578Right-handed 310
Helix 25
AC7
A
584 595Right-handed alpha
Helix 26
AC8
A
596 599Right-handed 310
Helix 27
AC9
A
602 622Right-handed alpha
Helix 28
AD1
A
626 634Right-handed alpha
Helix 29
AD2
A
639 644Right-handed alpha
Helix 30
AD3
A
650 654Right-handed 310
Helix 31
AD4
A
671 679Right-handed alpha
Helix 32
AD5
A
688 701Right-handed alpha
Helix 33
AD6
A
702 706Right-handed 310
Helix 34
AD7
A
716 730Right-handed alpha
Helix 35
AD8
A
745 760Right-handed alpha
Helix 36
AD9
A
776 789Right-handed alpha
Helix 37
AE1
A
835 852Right-handed alpha
Helix 38
AE2
A
868 874Right-handed alpha
Helix 39
AE3
A
887 894Right-handed alpha
Helix 40
AE4
A
898 920Right-handed alpha
Helix 41
AE5
A
957 960Right-handed 310
Helix 42
AE6
A
961 970Right-handed alpha
Helix 43
AE7
A
971 975Right-handed 310
Helix 44
AE8
A
982 990Right-handed alpha
Helix 45
AE9
A
1012 1021Right-handed alpha
Helix 46
AF1
A
1024 1035Right-handed alpha
Helix 47
AF2
A
1079 1083Right-handed alpha
Helix 48
AF3
A
1090 1094Right-handed 310
Helix 49
AF4
A
1135 1153Right-handed alpha
Helix 50
AF5
A
1163 1179Right-handed alpha
Helix 51
AF6
A
1197 1206Right-handed alpha
Helix 52
AF7
A
1221 1226Right-handed alpha
Helix 53
AF8
A
1227 1233Right-handed alpha
Helix 54
AF9
A
1239 1244Right-handed alpha
Helix 55
AG1
A
1265 1271Right-handed alpha
Helix 56
AG2
A
1295 1299Right-handed 310
Helix 57
AG3
A
1301 1317Right-handed alpha
Helix 58
AG4
A
1351 1363Right-handed alpha
Helix 59
AG5
A
1364 1366Right-handed 310
Helix 60
AG6
A
1395 1405Right-handed alpha
Helix 61
AG7
A
1414 1427Right-handed alpha
Helix 62
AG8
A
1435 1449Right-handed alpha
Helix 63
AG9
A
1472 1485Right-handed alpha
Helix 64
AH1
A
1491 1506Right-handed alpha
Helix 65
AH2
A
1515 1520Right-handed alpha
Helix 66
AH3
A
1525 1535Right-handed alpha
Helix 67
AH4
A
1537 1545Right-handed alpha
Helix 68
AH5
A
1580 1590Right-handed alpha
Helix 69
AH6
A
1613 1617Right-handed 310
Helix 70
AH7
A
1618 1622Right-handed 310
Helix 71
AH8
A
1640 1645Right-handed alpha
Helix 72
AH9
A
1677 1693Right-handed alpha
Helix 73
AI1
A
1743 1750Right-handed alpha
Helix 74
AI2
A
1788 1793Right-handed alpha
Helix 75
AI3
B
59 67Right-handed alpha
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There are 11 sheets in PDB entry 7VGQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 94first strand
Strand 2
A
97 100anti-parallel
Strand 3
A
136 137parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 388first strand
Strand 2
A
392 393anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 459first strand
Strand 2
A
522 524anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
529 534first strand
Strand 2
A
540 545anti-parallel
Strand 3
A
556 560anti-parallel
Strand 4
A
565 567anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
646 647first strand
Strand 2
A
1374 1375anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1236 1237first strand
Strand 2
A
1283 1284anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1323 1326first strand
Strand 2
A
1331 1334anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1548 1549first strand
Strand 2
A
1662 1663anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1630 1631first strand
Strand 2
A
1637 1638anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1716 1718first strand
Strand 2
A
1802 1804anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 51first strand
Strand 2
B
56 58anti-parallel
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