Analysis of interatomic Contacts of Structural Units in PDB entry:
7VGS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VGS entry

There are 6 chains in PDB entry 7VGS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 9	TYR 204
C	ASP 1	CYS 218
D	GLU 1	ARG 213
B	THR 9	TYR 204
E	ASP 1	CYS 218
F	GLU 1	ARG 213

There are 14 helices in PDB entry 7VGS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	37	Right-handed alpha
Helix 2	AA2	A	45	68	Right-handed alpha
Helix 3	AA3	A	78	106	Right-handed alpha
Helix 4	AA4	C	30	34	Right-handed 310
Helix 5	AA5	C	125	132	Right-handed alpha
Helix 6	AA6	C	187	191	Right-handed alpha
Helix 7	AA7	D	87	91	Right-handed 310
Helix 8	AA8	B	10	37	Right-handed alpha
Helix 9	AA9	B	45	68	Right-handed alpha
Helix 10	AB1	B	78	106	Right-handed alpha
Helix 11	AB2	E	30	34	Right-handed 310
Helix 12	AB3	E	125	132	Right-handed alpha
Helix 13	AB4	E	187	191	Right-handed alpha
Helix 14	AB5	F	87	91	Right-handed 310

There are 20 sheets in PDB entry 7VGS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	132	first strand
Strand 2	A	119	122	anti-parallel
Strand 3	A	166	170	anti-parallel
Strand 4	A	176	180	anti-parallel
Strand 5	A	195	201	anti-parallel
Strand 6	A	139	143	anti-parallel
Strand 7	A	149	151	anti-parallel
Strand 8	A	154	157	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	13	first strand
Strand 2	C	106	110	parallel
Strand 3	C	89	93	anti-parallel
Strand 4	C	38	42	anti-parallel
Strand 5	C	49	52	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	21	first strand
Strand 2	C	74	79	anti-parallel
Strand 3	C	66	71	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	122	first strand
Strand 2	C	133	143	anti-parallel
Strand 3	C	177	186	anti-parallel
Strand 4	C	163	167	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	159	first strand
Strand 2	C	149	154	anti-parallel
Strand 3	C	195	201	anti-parallel
Strand 4	C	209	214	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	69	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	72	73	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	107	111	parallel
Strand 3	D	93	97	anti-parallel
Strand 4	D	35	40	anti-parallel
Strand 5	D	44	51	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	124	first strand
Strand 2	D	136	145	anti-parallel
Strand 3	D	174	183	anti-parallel
Strand 4	D	163	171	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	154	first strand
Strand 2	D	194	199	anti-parallel
Strand 3	D	204	209	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	132	first strand
Strand 2	B	119	122	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	176	180	anti-parallel
Strand 5	B	195	201	anti-parallel
Strand 6	B	139	143	anti-parallel
Strand 7	B	149	151	anti-parallel
Strand 8	B	154	157	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	13	first strand
Strand 2	E	106	110	parallel
Strand 3	E	89	93	anti-parallel
Strand 4	E	38	42	anti-parallel
Strand 5	E	49	52	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	21	first strand
Strand 2	E	74	79	anti-parallel
Strand 3	E	66	71	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	122	first strand
Strand 2	E	133	143	anti-parallel
Strand 3	E	177	186	anti-parallel
Strand 4	E	163	167	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	159	first strand
Strand 2	E	149	154	anti-parallel
Strand 3	E	195	201	anti-parallel
Strand 4	E	209	214	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	6	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	69	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	6	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	72	73	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	107	111	parallel
Strand 3	F	93	97	anti-parallel
Strand 4	F	35	40	anti-parallel
Strand 5	F	44	51	anti-parallel
Strand 6	F	58	60	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	120	124	first strand
Strand 2	F	136	145	anti-parallel
Strand 3	F	174	183	anti-parallel
Strand 4	F	163	171	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	151	154	first strand
Strand 2	F	194	199	anti-parallel
Strand 3	F	204	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VGS

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VGS