Analysis of interatomic Contacts of Structural Units in PDB entry:
7VGV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VGV entry

There are 3 chains in PDB entry 7VGV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2ILE 265
B
 ASN 3ILE 265
C
 LYS 2ILE 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 7VGV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 8Right-handed 310
Helix 2
AA2
A
11 40Right-handed alpha
Helix 3
AA3
A
41 43Right-handed 310
Helix 4
AA4
A
44 75Right-handed alpha
Helix 5
AA5
A
92 114Right-handed alpha
Helix 6
AA6
A
117 144Right-handed alpha
Helix 7
AA7
A
149 179Right-handed alpha
Helix 8
AA8
A
180 182Right-handed 310
Helix 9
AA9
A
185 209Right-handed alpha
Helix 10
AB1
A
209 214Right-handed alpha
Helix 11
AB2
A
216 235Right-handed alpha
Helix 12
AB3
A
235 253Right-handed alpha
Helix 13
AB4
A
255 265Right-handed alpha
Helix 14
AB5
B
3 8Right-handed 310
Helix 15
AB6
B
12 40Right-handed alpha
Helix 16
AB7
B
41 43Right-handed 310
Helix 17
AB8
B
47 75Right-handed alpha
Helix 18
AB9
B
92 114Right-handed alpha
Helix 19
AC1
B
117 144Right-handed alpha
Helix 20
AC2
B
149 179Right-handed alpha
Helix 21
AC3
B
180 182Right-handed 310
Helix 22
AC4
B
185 209Right-handed alpha
Helix 23
AC5
B
209 214Right-handed alpha
Helix 24
AC6
B
216 253Right-handed alpha
Helix 25
AC7
B
255 265Right-handed alpha
Helix 26
AC8
C
3 8Right-handed 310
Helix 27
AC9
C
11 40Right-handed alpha
Helix 28
AD1
C
41 43Right-handed 310
Helix 29
AD2
C
44 75Right-handed alpha
Helix 30
AD3
C
92 114Right-handed alpha
Helix 31
AD4
C
117 144Right-handed alpha
Helix 32
AD5
C
149 179Right-handed alpha
Helix 33
AD6
C
180 182Right-handed 310
Helix 34
AD7
C
185 209Right-handed alpha
Helix 35
AD8
C
209 214Right-handed alpha
Helix 36
AD9
C
216 235Right-handed alpha
Helix 37
AE1
C
235 253Right-handed alpha
Helix 38
AE2
C
255 265Right-handed alpha
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There are 3 sheets in PDB entry 7VGV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 79first strand
Strand 2
A
82 85anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 11first strand
Strand 2
B
82 85anti-parallel
Strand 3
B
76 79anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
76 79first strand
Strand 2
C
82 85anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il