Analysis of interatomic Contacts of Structural Units in PDB entry:
7VGW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VGW entry

There are 2 chains in PDB entry 7VGW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 68ALA 281
B
 PRO 68LEU 282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 7VGW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
113 117Right-handed 310
Helix 2
AA2
A
153 157Right-handed 310
Helix 3
AA3
A
160 167Right-handed 310
Helix 4
AA4
A
169 180Right-handed alpha
Helix 5
AA5
A
204 208Right-handed 310
Helix 6
AA6
B
153 157Right-handed 310
Helix 7
AA7
B
160 167Right-handed 310
Helix 8
AA8
B
169 180Right-handed alpha
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There are 3 sheets in PDB entry 7VGW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
B
240 241anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 227first strand
Strand 2
A
210 221anti-parallel
Strand 3
A
245 251anti-parallel
Strand 4
A
257 262anti-parallel
Strand 5
A
270 276anti-parallel
Strand 6
A
84 90anti-parallel
Strand 7
A
95 105anti-parallel
Strand 8
A
120 127anti-parallel
Strand 9
A
135 144anti-parallel
Strand 10
A
210 221anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 226first strand
Strand 2
B
210 220anti-parallel
Strand 3
B
245 251anti-parallel
Strand 4
B
257 262anti-parallel
Strand 5
B
270 276anti-parallel
Strand 6
B
84 90anti-parallel
Strand 7
B
95 105anti-parallel
Strand 8
B
120 130anti-parallel
Strand 9
B
133 144anti-parallel
Strand 10
B
210 220anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il