Analysis of interatomic Contacts of Structural Units in PDB entry:
7VHJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VHJ entry

There are 3 chains in PDB entry 7VHJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLN 14	SER 1140
A	ALA 27	SER 1140
C	ALA 27	SER 1140

There are 58 helices in PDB entry 7VHJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	294	302	Right-handed alpha
Helix 2	AA2	B	337	343	Right-handed alpha
Helix 3	AA3	B	405	410	Right-handed 310
Helix 4	AA4	B	416	422	Right-handed alpha
Helix 5	AA5	B	730	736	Right-handed alpha
Helix 6	AA6	B	740	748	Right-handed alpha
Helix 7	AA7	B	751	775	Right-handed alpha
Helix 8	AA8	B	809	819	Right-handed alpha
Helix 9	AA9	B	843	847	Right-handed alpha
Helix 10	AB1	B	848	850	Right-handed 310
Helix 11	AB2	B	859	876	Right-handed alpha
Helix 12	AB3	B	890	903	Right-handed alpha
Helix 13	AB4	B	906	912	Right-handed alpha
Helix 14	AB5	B	912	934	Right-handed alpha
Helix 15	AB6	B	939	958	Right-handed alpha
Helix 16	AB7	B	959	961	Right-handed 310
Helix 17	AB8	B	969	977	Right-handed alpha
Helix 18	AB9	B	978	1026	Right-handed alpha
Helix 19	AC1	B	1133	1140	Right-handed alpha
Helix 20	AC2	A	294	304	Right-handed alpha
Helix 21	AC3	A	338	344	Right-handed alpha
Helix 22	AC4	A	364	369	Right-handed alpha
Helix 23	AC5	A	383	388	Right-handed 310
Helix 24	AC6	A	404	409	Right-handed 310
Helix 25	AC7	A	416	421	Right-handed alpha
Helix 26	AC8	A	502	506	Right-handed 310
Helix 27	AC9	A	618	624	Right-handed alpha
Helix 28	AD1	A	730	736	Right-handed alpha
Helix 29	AD2	A	739	748	Right-handed alpha
Helix 30	AD3	A	751	775	Right-handed alpha
Helix 31	AD4	A	809	819	Right-handed alpha
Helix 32	AD5	A	843	848	Right-handed alpha
Helix 33	AD6	A	859	877	Right-handed alpha
Helix 34	AD7	A	879	884	Right-handed alpha
Helix 35	AD8	A	890	902	Right-handed alpha
Helix 36	AD9	A	905	912	Right-handed alpha
Helix 37	AE1	A	912	934	Right-handed alpha
Helix 38	AE2	A	938	958	Right-handed alpha
Helix 39	AE3	A	959	961	Right-handed 310
Helix 40	AE4	A	969	977	Right-handed alpha
Helix 41	AE5	A	978	1025	Right-handed alpha
Helix 42	AE6	A	1109	1113	Right-handed 310
Helix 43	AE7	A	1134	1140	Right-handed alpha
Helix 44	AE8	C	294	303	Right-handed alpha
Helix 45	AE9	C	383	387	Right-handed 310
Helix 46	AF1	C	405	408	Right-handed 310
Helix 47	AF2	C	502	505	Right-handed 310
Helix 48	AF3	C	730	735	Right-handed alpha
Helix 49	AF4	C	739	750	Right-handed alpha
Helix 50	AF5	C	751	776	Right-handed alpha
Helix 51	AF6	C	809	817	Right-handed alpha
Helix 52	AF7	C	859	877	Right-handed alpha
Helix 53	AF8	C	890	903	Right-handed alpha
Helix 54	AF9	C	905	934	Right-handed alpha
Helix 55	AG1	C	938	958	Right-handed alpha
Helix 56	AG2	C	969	977	Right-handed alpha
Helix 57	AG3	C	978	1025	Right-handed alpha
Helix 58	AG4	C	1109	1111	Right-handed 310

There are 48 sheets in PDB entry 7VHJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	31	first strand
Strand 2	B	60	66	anti-parallel
Strand 3	B	263	269	anti-parallel
Strand 4	B	90	96	anti-parallel
Strand 5	B	188	197	anti-parallel
Strand 6	B	200	209	anti-parallel
Strand 7	B	228	230	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	55	first strand
Strand 2	B	271	279	anti-parallel
Strand 3	B	285	290	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	237	241	anti-parallel
Strand 3	B	103	107	anti-parallel
Strand 4	B	116	122	anti-parallel
Strand 5	B	125	131	anti-parallel
Strand 6	B	167	171	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	158	first strand
Strand 2	B	140	145	anti-parallel
Strand 3	B	243	246	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	317	first strand
Strand 2	B	594	598	anti-parallel
Strand 3	B	609	611	anti-parallel
Strand 4	B	648	651	anti-parallel
Strand 5	B	642	645	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	328	first strand
Strand 2	B	538	543	parallel
Strand 3	B	547	554	anti-parallel
Strand 4	B	584	588	anti-parallel
Strand 5	B	575	577	anti-parallel
Strand 6	B	565	566	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	393	403	anti-parallel
Strand 3	B	507	516	anti-parallel
Strand 4	B	432	437	anti-parallel
Strand 5	B	376	379	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	454	first strand
Strand 2	B	492	494	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	660	first strand
Strand 2	B	683	690	parallel
Strand 3	B	670	676	anti-parallel
Strand 4	B	664	667	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	704	708	first strand
Strand 2	B	1065	1069	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	713	first strand
Strand 2	B	1052	1062	anti-parallel
Strand 3	B	1040	1044	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	716	720	first strand
Strand 2	B	1052	1062	anti-parallel
Strand 3	B	1047	1049	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	781	783	first strand
Strand 2	A	695	697	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1113	1116	first strand
Strand 2	B	1080	1083	anti-parallel
Strand 3	B	1074	1075	anti-parallel
Strand 4	B	1126	1127	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1089	1090	first strand
Strand 2	B	1095	1096	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	31	first strand
Strand 2	A	60	68	anti-parallel
Strand 3	A	262	278	anti-parallel
Strand 4	A	89	95	anti-parallel
Strand 5	A	189	197	anti-parallel
Strand 6	A	200	208	anti-parallel
Strand 7	A	224	230	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	55	first strand
Strand 2	A	262	278	anti-parallel
Strand 3	A	287	290	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	237	238	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	103	first strand
Strand 2	A	241	242	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	120	first strand
Strand 2	A	126	129	anti-parallel
Strand 3	A	170	172	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	145	first strand
Strand 2	A	152	156	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	317	first strand
Strand 2	A	594	598	anti-parallel
Strand 3	A	609	612	anti-parallel
Strand 4	A	650	651	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	328	first strand
Strand 2	A	542	543	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	362	first strand
Strand 2	A	524	525	parallel
Strand 3	A	391	392	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	378	first strand
Strand 2	A	431	437	anti-parallel
Strand 3	A	508	515	anti-parallel
Strand 4	A	395	402	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	453	first strand
Strand 2	A	493	494	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	551	553	first strand
Strand 2	A	584	588	anti-parallel
Strand 3	A	573	577	anti-parallel
Strand 4	A	566	567	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	654	655	first strand
Strand 2	A	685	689	parallel
Strand 3	A	670	674	anti-parallel
Strand 4	A	664	667	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	704	720	first strand
Strand 2	A	1052	1071	anti-parallel
Strand 3	A	1040	1049	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	704	720	first strand
Strand 2	A	1052	1071	anti-parallel
Strand 3	A	1087	1090	anti-parallel
Strand 4	A	1095	1098	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	727	729	first strand
Strand 2	A	851	853	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1080	1081	first strand
Strand 2	A	1074	1075	anti-parallel
Strand 3	A	1126	1127	parallel

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There are 7 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	30	first strand
Strand 2	C	61	68	anti-parallel
Strand 3	C	262	267	anti-parallel
Strand 4	C	89	95	anti-parallel
Strand 5	C	188	195	anti-parallel
Strand 6	C	201	209	anti-parallel
Strand 7	C	224	229	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	53	first strand
Strand 2	C	273	279	anti-parallel
Strand 3	C	285	290	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	237	241	anti-parallel
Strand 3	C	103	107	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	145	first strand
Strand 2	C	152	157	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	317	first strand
Strand 2	C	594	599	anti-parallel
Strand 3	C	609	612	anti-parallel
Strand 4	C	649	651	anti-parallel
Strand 5	C	643	644	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	327	first strand
Strand 2	C	540	542	parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	356	358	first strand
Strand 2	C	395	403	anti-parallel
Strand 3	C	507	515	anti-parallel
Strand 4	C	431	436	anti-parallel
Strand 5	C	374	379	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	391	392	first strand
Strand 2	C	524	525	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	454	first strand
Strand 2	C	492	494	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	551	554	first strand
Strand 2	C	584	588	anti-parallel
Strand 3	C	575	577	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	655	656	first strand
Strand 2	C	684	689	parallel
Strand 3	C	670	675	anti-parallel
Strand 4	C	664	667	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	704	713	first strand
Strand 2	C	1052	1069	anti-parallel
Strand 3	C	716	721	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	704	713	first strand
Strand 2	C	1052	1069	anti-parallel
Strand 3	C	1040	1049	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1074	1075	first strand
Strand 2	C	1126	1127	parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1082	1083	first strand
Strand 2	C	1113	1114	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1087	1089	first strand
Strand 2	C	1096	1098	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VHJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VHJ