Analysis of interatomic Contacts of Structural Units in PDB entry:
7VHL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VHL entry

There are 3 chains in PDB entry 7VHL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLN 14	SER 1131
B	GLN 14	SER 1131
A	GLN 14	SER 1131

There are 73 helices in PDB entry 7VHL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	68	70	Right-handed 310
Helix 2	AA2	C	125	129	Right-handed 310
Helix 3	AA3	C	281	284	Right-handed 310
Helix 4	AA4	C	285	295	Right-handed alpha
Helix 5	AA5	C	328	334	Right-handed alpha
Helix 6	AA6	C	356	361	Right-handed alpha
Helix 7	AA7	C	374	378	Right-handed 310
Helix 8	AA8	C	395	400	Right-handed 310
Helix 9	AA9	C	408	414	Right-handed alpha
Helix 10	AB1	C	610	615	Right-handed alpha
Helix 11	AB2	C	721	727	Right-handed alpha
Helix 12	AB3	C	730	740	Right-handed alpha
Helix 13	AB4	C	742	767	Right-handed alpha
Helix 14	AB5	C	800	810	Right-handed alpha
Helix 15	AB6	C	836	840	Right-handed 310
Helix 16	AB7	C	850	867	Right-handed alpha
Helix 17	AB8	C	870	874	Right-handed 310
Helix 18	AB9	C	881	892	Right-handed alpha
Helix 19	AC1	C	896	902	Right-handed alpha
Helix 20	AC2	C	903	923	Right-handed alpha
Helix 21	AC3	C	930	949	Right-handed alpha
Helix 22	AC4	C	950	952	Right-handed 310
Helix 23	AC5	C	960	968	Right-handed alpha
Helix 24	AC6	C	969	972	Right-handed 310
Helix 25	AC7	C	973	1017	Right-handed alpha
Helix 26	AC8	C	1124	1129	Right-handed alpha
Helix 27	AC9	B	285	295	Right-handed alpha
Helix 28	AD1	B	329	334	Right-handed alpha
Helix 29	AD2	B	340	344	Right-handed 310
Helix 30	AD3	B	356	361	Right-handed alpha
Helix 31	AD4	B	375	379	Right-handed 310
Helix 32	AD5	B	396	400	Right-handed 310
Helix 33	AD6	B	408	412	Right-handed 310
Helix 34	AD7	B	429	434	Right-handed alpha
Helix 35	AD8	B	610	614	Right-handed 310
Helix 36	AD9	B	721	726	Right-handed alpha
Helix 37	AE1	B	730	739	Right-handed alpha
Helix 38	AE2	B	742	767	Right-handed alpha
Helix 39	AE3	B	800	809	Right-handed alpha
Helix 40	AE4	B	834	838	Right-handed 310
Helix 41	AE5	B	850	868	Right-handed alpha
Helix 42	AE6	B	870	875	Right-handed alpha
Helix 43	AE7	B	881	891	Right-handed alpha
Helix 44	AE8	B	892	894	Right-handed 310
Helix 45	AE9	B	896	903	Right-handed alpha
Helix 46	AF1	B	903	923	Right-handed alpha
Helix 47	AF2	B	924	928	Right-handed 310
Helix 48	AF3	B	929	950	Right-handed alpha
Helix 49	AF4	B	960	968	Right-handed alpha
Helix 50	AF5	B	969	1016	Right-handed alpha
Helix 51	AF6	B	1100	1102	Right-handed 310
Helix 52	AF7	B	1125	1131	Right-handed 310
Helix 53	AF8	A	285	294	Right-handed alpha
Helix 54	AF9	A	328	334	Right-handed alpha
Helix 55	AG1	A	355	362	Right-handed alpha
Helix 56	AG2	A	374	379	Right-handed alpha
Helix 57	AG3	A	395	399	Right-handed 310
Helix 58	AG4	A	721	728	Right-handed alpha
Helix 59	AG5	A	730	741	Right-handed alpha
Helix 60	AG6	A	742	767	Right-handed alpha
Helix 61	AG7	A	800	810	Right-handed alpha
Helix 62	AG8	A	834	839	Right-handed alpha
Helix 63	AG9	A	850	868	Right-handed alpha
Helix 64	AH1	A	870	875	Right-handed alpha
Helix 65	AH2	A	881	893	Right-handed alpha
Helix 66	AH3	A	896	903	Right-handed alpha
Helix 67	AH4	A	903	923	Right-handed alpha
Helix 68	AH5	A	925	928	Right-handed 310
Helix 69	AH6	A	929	949	Right-handed alpha
Helix 70	AH7	A	950	952	Right-handed 310
Helix 71	AH8	A	960	968	Right-handed alpha
Helix 72	AH9	A	969	1015	Right-handed alpha
Helix 73	AI1	A	1124	1129	Right-handed alpha

There are 50 sheets in PDB entry 7VHL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	55	first strand
Strand 2	C	262	267	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	66	first strand
Strand 2	C	255	260	anti-parallel
Strand 3	C	81	86	anti-parallel
Strand 4	C	180	187	anti-parallel
Strand 5	C	198	199	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	66	first strand
Strand 2	C	255	260	anti-parallel
Strand 3	C	81	86	anti-parallel
Strand 4	C	180	187	anti-parallel
Strand 5	C	192	196	anti-parallel
Strand 6	C	215	216	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	76	first strand
Strand 2	C	228	232	anti-parallel
Strand 3	C	94	98	anti-parallel
Strand 4	C	108	110	anti-parallel
Strand 5	C	117	120	anti-parallel
Strand 6	C	160	163	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	302	304	first strand
Strand 2	C	587	590	anti-parallel
Strand 3	C	600	604	anti-parallel
Strand 4	C	639	641	anti-parallel
Strand 5	C	634	635	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	316	319	first strand
Strand 2	C	529	534	parallel
Strand 3	C	537	545	anti-parallel
Strand 4	C	575	579	anti-parallel
Strand 5	C	564	568	anti-parallel
Strand 6	C	556	558	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	349	first strand
Strand 2	C	386	393	anti-parallel
Strand 3	C	499	504	anti-parallel
Strand 4	C	423	428	anti-parallel
Strand 5	C	365	369	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	353	first strand
Strand 2	C	515	516	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	443	445	first strand
Strand 2	C	483	485	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	645	646	first strand
Strand 2	C	677	680	parallel
Strand 3	C	661	663	anti-parallel
Strand 4	C	655	658	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	685	687	first strand
Strand 2	A	771	773	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	695	697	first strand
Strand 2	C	1058	1061	anti-parallel
Strand 3	C	1078	1081	anti-parallel
Strand 4	C	1086	1089	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	701	706	first strand
Strand 2	C	1049	1054	anti-parallel
Strand 3	C	1031	1034	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	709	712	first strand
Strand 2	C	1043	1046	anti-parallel
Strand 3	C	1037	1040	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	718	720	first strand
Strand 2	C	842	844	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	771	774	first strand
Strand 2	B	685	688	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1104	1109	first strand
Strand 2	C	1070	1074	anti-parallel
Strand 3	C	1065	1066	anti-parallel
Strand 4	C	1117	1118	parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	29	first strand
Strand 2	B	62	66	anti-parallel
Strand 3	B	255	260	anti-parallel
Strand 4	B	81	86	anti-parallel
Strand 5	B	180	187	anti-parallel
Strand 6	B	192	199	anti-parallel
Strand 7	B	215	218	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	55	first strand
Strand 2	B	262	267	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	76	first strand
Strand 2	B	228	232	anti-parallel
Strand 3	B	94	97	anti-parallel
Strand 4	B	108	111	anti-parallel
Strand 5	B	117	120	anti-parallel
Strand 6	B	162	163	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	270	first strand
Strand 2	B	276	278	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	302	308	first strand
Strand 2	B	585	590	anti-parallel
Strand 3	B	600	603	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	316	first strand
Strand 2	B	529	531	parallel
Strand 3	B	541	542	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	349	first strand
Strand 2	B	386	389	anti-parallel
Strand 3	B	505	506	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	353	first strand
Strand 2	B	515	516	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	368	first strand
Strand 2	B	425	427	anti-parallel
Strand 3	B	500	502	anti-parallel
Strand 4	B	391	392	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	443	445	first strand
Strand 2	B	483	485	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	633	636	first strand
Strand 2	B	639	642	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	645	646	first strand
Strand 2	B	675	680	parallel
Strand 3	B	661	666	anti-parallel
Strand 4	B	655	658	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	695	697	first strand
Strand 2	B	1058	1061	anti-parallel
Strand 3	B	1078	1081	anti-parallel
Strand 4	B	1086	1089	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	703	712	first strand
Strand 2	B	1043	1052	anti-parallel
Strand 3	B	1031	1040	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	771	774	first strand
Strand 2	A	685	688	parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1104	1109	first strand
Strand 2	B	1070	1074	anti-parallel
Strand 3	B	1065	1066	anti-parallel
Strand 4	B	1117	1118	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	55	first strand
Strand 2	A	262	270	anti-parallel
Strand 3	A	276	279	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	64	first strand
Strand 2	A	257	259	anti-parallel
Strand 3	A	81	84	anti-parallel
Strand 4	A	183	185	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	87	first strand
Strand 2	A	178	180	anti-parallel
Strand 3	A	199	201	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	98	first strand
Strand 2	A	228	229	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	196	first strand
Strand 2	A	215	218	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	304	first strand
Strand 2	A	583	590	anti-parallel
Strand 3	A	308	310	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	304	first strand
Strand 2	A	583	590	anti-parallel
Strand 3	A	600	603	anti-parallel
Strand 4	A	640	641	anti-parallel
Strand 5	A	634	635	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	319	first strand
Strand 2	A	530	534	parallel
Strand 3	A	540	545	anti-parallel
Strand 4	A	575	579	anti-parallel
Strand 5	A	566	568	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	349	first strand
Strand 2	A	386	387	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	353	first strand
Strand 2	A	515	516	parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	370	first strand
Strand 2	A	423	428	anti-parallel
Strand 3	A	499	503	anti-parallel
Strand 4	A	389	393	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	645	646	first strand
Strand 2	A	677	680	parallel
Strand 3	A	661	663	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	695	697	first strand
Strand 2	A	1058	1061	anti-parallel
Strand 3	A	1078	1081	anti-parallel
Strand 4	A	1086	1089	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	701	702	first strand
Strand 2	A	1053	1054	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	705	712	first strand
Strand 2	A	1043	1051	anti-parallel
Strand 3	A	1031	1040	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1065	1066	first strand
Strand 2	A	1117	1118	parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1070	1074	first strand
Strand 2	A	1104	1109	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VHL

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VHL