Analysis of interatomic Contacts of Structural Units in PDB entry:
7VHM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VHM entry

There are 3 chains in PDB entry 7VHM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 14	SER 1131
B	GLN 14	SER 1131
C	GLN 14	SER 1131

There are 75 helices in PDB entry 7VHM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	68	70	Right-handed 310
Helix 2	AA2	A	285	294	Right-handed alpha
Helix 3	AA3	A	328	334	Right-handed alpha
Helix 4	AA4	A	356	361	Right-handed alpha
Helix 5	AA5	A	374	381	Right-handed 310
Helix 6	AA6	A	394	398	Right-handed 310
Helix 7	AA7	A	607	611	Right-handed 310
Helix 8	AA8	A	722	727	Right-handed alpha
Helix 9	AA9	A	731	738	Right-handed alpha
Helix 10	AB1	A	739	741	Right-handed 310
Helix 11	AB2	A	743	767	Right-handed alpha
Helix 12	AB3	A	800	809	Right-handed alpha
Helix 13	AB4	A	837	840	Right-handed 310
Helix 14	AB5	A	850	868	Right-handed alpha
Helix 15	AB6	A	870	875	Right-handed alpha
Helix 16	AB7	A	881	892	Right-handed alpha
Helix 17	AB8	A	897	902	Right-handed alpha
Helix 18	AB9	A	903	923	Right-handed alpha
Helix 19	AC1	A	925	928	Right-handed 310
Helix 20	AC2	A	929	949	Right-handed alpha
Helix 21	AC3	A	950	952	Right-handed 310
Helix 22	AC4	A	960	966	Right-handed alpha
Helix 23	AC5	A	969	1017	Right-handed alpha
Helix 24	AC6	A	1124	1129	Right-handed alpha
Helix 25	AC7	B	68	70	Right-handed 310
Helix 26	AC8	B	285	294	Right-handed alpha
Helix 27	AC9	B	328	334	Right-handed alpha
Helix 28	AD1	B	356	361	Right-handed alpha
Helix 29	AD2	B	374	381	Right-handed 310
Helix 30	AD3	B	394	398	Right-handed 310
Helix 31	AD4	B	408	413	Right-handed alpha
Helix 32	AD5	B	607	611	Right-handed 310
Helix 33	AD6	B	722	727	Right-handed alpha
Helix 34	AD7	B	731	738	Right-handed alpha
Helix 35	AD8	B	739	741	Right-handed 310
Helix 36	AD9	B	742	767	Right-handed alpha
Helix 37	AE1	B	800	809	Right-handed alpha
Helix 38	AE2	B	837	840	Right-handed 310
Helix 39	AE3	B	850	868	Right-handed alpha
Helix 40	AE4	B	870	875	Right-handed alpha
Helix 41	AE5	B	881	894	Right-handed alpha
Helix 42	AE6	B	896	900	Right-handed 310
Helix 43	AE7	B	903	923	Right-handed alpha
Helix 44	AE8	B	925	928	Right-handed 310
Helix 45	AE9	B	929	949	Right-handed alpha
Helix 46	AF1	B	950	952	Right-handed 310
Helix 47	AF2	B	960	965	Right-handed alpha
Helix 48	AF3	B	966	968	Right-handed 310
Helix 49	AF4	B	969	1017	Right-handed alpha
Helix 50	AF5	B	1124	1129	Right-handed alpha
Helix 51	AF6	C	68	70	Right-handed 310
Helix 52	AF7	C	285	294	Right-handed alpha
Helix 53	AF8	C	328	334	Right-handed alpha
Helix 54	AF9	C	356	361	Right-handed alpha
Helix 55	AG1	C	374	381	Right-handed 310
Helix 56	AG2	C	394	398	Right-handed 310
Helix 57	AG3	C	408	413	Right-handed alpha
Helix 58	AG4	C	607	611	Right-handed 310
Helix 59	AG5	C	722	727	Right-handed alpha
Helix 60	AG6	C	731	738	Right-handed alpha
Helix 61	AG7	C	739	741	Right-handed 310
Helix 62	AG8	C	742	767	Right-handed alpha
Helix 63	AG9	C	800	809	Right-handed alpha
Helix 64	AH1	C	837	840	Right-handed 310
Helix 65	AH2	C	850	868	Right-handed alpha
Helix 66	AH3	C	870	875	Right-handed alpha
Helix 67	AH4	C	881	893	Right-handed alpha
Helix 68	AH5	C	897	902	Right-handed alpha
Helix 69	AH6	C	903	923	Right-handed alpha
Helix 70	AH7	C	925	928	Right-handed 310
Helix 71	AH8	C	929	949	Right-handed alpha
Helix 72	AH9	C	950	952	Right-handed 310
Helix 73	AI1	C	960	965	Right-handed alpha
Helix 74	AI2	C	969	1017	Right-handed alpha
Helix 75	AI3	C	1124	1129	Right-handed alpha

There are 55 sheets in PDB entry 7VHM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	31	first strand
Strand 2	A	60	66	anti-parallel
Strand 3	A	255	260	anti-parallel
Strand 4	A	81	87	anti-parallel
Strand 5	A	178	188	anti-parallel
Strand 6	A	191	201	anti-parallel
Strand 7	A	213	220	anti-parallel
Strand 8	A	36	37	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	C	556	558	parallel
Strand 3	C	564	566	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	51	first strand
Strand 2	A	266	270	anti-parallel
Strand 3	A	276	280	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	262	263	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	110	first strand
Strand 2	A	119	122	anti-parallel
Strand 3	A	157	161	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	307	first strand
Strand 2	A	585	590	anti-parallel
Strand 3	A	600	604	anti-parallel
Strand 4	A	639	642	anti-parallel
Strand 5	A	633	636	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	316	first strand
Strand 2	A	529	534	parallel
Strand 3	A	537	542	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	349	first strand
Strand 2	A	386	393	anti-parallel
Strand 3	A	499	505	anti-parallel
Strand 4	A	422	428	anti-parallel
Strand 5	A	370	371	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	353	first strand
Strand 2	A	515	516	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	443	445	first strand
Strand 2	A	483	485	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	544	545	first strand
Strand 2	A	576	577	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	564	566	first strand
Strand 2	A	556	558	anti-parallel
Strand 3	B	42	43	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	644	645	first strand
Strand 2	A	675	677	parallel
Strand 3	A	665	666	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	656	658	first strand
Strand 2	A	661	662	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	685	686	first strand
Strand 2	B	771	772	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	695	697	first strand
Strand 2	A	1058	1061	anti-parallel
Strand 3	A	1078	1081	anti-parallel
Strand 4	A	1086	1090	anti-parallel
Strand 5	A	1093	1098	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	701	712	first strand
Strand 2	A	1043	1054	anti-parallel
Strand 3	A	1031	1034	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	701	712	first strand
Strand 2	A	1043	1054	anti-parallel
Strand 3	A	1037	1040	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	717	720	first strand
Strand 2	A	842	845	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	771	772	first strand
Strand 2	C	685	686	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1104	1106	first strand
Strand 2	A	1071	1074	anti-parallel
Strand 3	A	1065	1066	anti-parallel
Strand 4	A	1117	1118	parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	31	first strand
Strand 2	B	60	66	anti-parallel
Strand 3	B	255	260	anti-parallel
Strand 4	B	81	87	anti-parallel
Strand 5	B	178	188	anti-parallel
Strand 6	B	191	201	anti-parallel
Strand 7	B	213	220	anti-parallel
Strand 8	B	36	37	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	55	first strand
Strand 2	B	262	270	anti-parallel
Strand 3	B	276	280	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	110	first strand
Strand 2	B	119	122	anti-parallel
Strand 3	B	157	161	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	302	309	first strand
Strand 2	B	584	590	anti-parallel
Strand 3	B	600	604	anti-parallel
Strand 4	B	639	642	anti-parallel
Strand 5	B	633	636	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	316	first strand
Strand 2	B	529	534	parallel
Strand 3	B	537	542	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	349	first strand
Strand 2	B	386	393	anti-parallel
Strand 3	B	499	505	anti-parallel
Strand 4	B	422	428	anti-parallel
Strand 5	B	370	371	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	353	first strand
Strand 2	B	515	516	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	443	445	first strand
Strand 2	B	483	485	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	545	first strand
Strand 2	B	576	577	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	567	first strand
Strand 2	B	556	558	anti-parallel
Strand 3	C	42	43	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	644	645	first strand
Strand 2	B	675	677	parallel
Strand 3	B	665	666	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	656	658	first strand
Strand 2	B	661	662	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	685	686	first strand
Strand 2	C	771	772	parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	695	697	first strand
Strand 2	B	1058	1061	anti-parallel
Strand 3	B	1078	1081	anti-parallel
Strand 4	B	1086	1089	anti-parallel
Strand 5	B	1097	1098	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	701	712	first strand
Strand 2	B	1043	1054	anti-parallel
Strand 3	B	1031	1040	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	717	720	first strand
Strand 2	B	842	845	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1104	1106	first strand
Strand 2	B	1071	1074	anti-parallel
Strand 3	B	1065	1066	anti-parallel
Strand 4	B	1117	1118	parallel

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There are 8 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	31	first strand
Strand 2	C	60	66	anti-parallel
Strand 3	C	255	260	anti-parallel
Strand 4	C	81	87	anti-parallel
Strand 5	C	178	188	anti-parallel
Strand 6	C	191	201	anti-parallel
Strand 7	C	213	220	anti-parallel
Strand 8	C	36	37	parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	51	first strand
Strand 2	C	266	270	anti-parallel
Strand 3	C	276	280	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	262	263	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	110	first strand
Strand 2	C	119	126	anti-parallel
Strand 3	C	151	161	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	302	307	first strand
Strand 2	C	585	590	anti-parallel
Strand 3	C	600	604	anti-parallel
Strand 4	C	639	642	anti-parallel
Strand 5	C	633	636	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	315	316	first strand
Strand 2	C	529	534	parallel
Strand 3	C	537	542	anti-parallel

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There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	349	first strand
Strand 2	C	386	393	anti-parallel
Strand 3	C	499	505	anti-parallel
Strand 4	C	422	428	anti-parallel
Strand 5	C	367	371	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	353	first strand
Strand 2	C	515	516	parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	443	445	first strand
Strand 2	C	483	485	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	544	545	first strand
Strand 2	C	576	577	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	644	645	first strand
Strand 2	C	675	677	parallel
Strand 3	C	665	666	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	656	658	first strand
Strand 2	C	661	662	anti-parallel

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There are 5 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	695	697	first strand
Strand 2	C	1058	1062	anti-parallel
Strand 3	C	1078	1081	anti-parallel
Strand 4	C	1086	1089	anti-parallel
Strand 5	C	1097	1098	anti-parallel

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There are 3 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	701	712	first strand
Strand 2	C	1043	1054	anti-parallel
Strand 3	C	1031	1034	anti-parallel

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There are 3 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	701	712	first strand
Strand 2	C	1043	1054	anti-parallel
Strand 3	C	1037	1040	anti-parallel

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There are 2 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	717	720	first strand
Strand 2	C	842	845	anti-parallel

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There are 4 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1104	1106	first strand
Strand 2	C	1071	1074	anti-parallel
Strand 3	C	1065	1066	anti-parallel
Strand 4	C	1117	1118	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VHM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VHM