Analysis of interatomic Contacts of Structural Units in PDB entry:
7VHQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VHQ entry

There are 12 chains in PDB entry 7VHQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 30	PRO 92
B	ARG 30	PRO 92
C	ARG 30	PRO 92
D	ARG 30	PRO 92
E	ARG 79	ASP 345
F	ARG 79	ASP 345
G	MET 1	PRO 329
H	MET 1	PRO 329
I	MET 1	PRO 329
U	ARG 79	ASP 345
e	ARG 30	PRO 92
f	ARG 30	PRO 92

There are 58 helices in PDB entry 7VHQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	33	43	Right-handed alpha
Helix 2	AA2	A	75	84	Right-handed alpha
Helix 3	AA3	B	33	44	Right-handed alpha
Helix 4	AA4	B	76	84	Right-handed alpha
Helix 5	AA5	C	33	43	Right-handed alpha
Helix 6	AA6	C	74	84	Right-handed alpha
Helix 7	AA7	D	33	43	Right-handed alpha
Helix 8	AA8	D	75	84	Right-handed alpha
Helix 9	AA9	E	80	96	Right-handed alpha
Helix 10	AB1	E	169	176	Right-handed alpha
Helix 11	AB2	E	179	199	Right-handed alpha
Helix 12	AB3	E	200	206	Right-handed alpha
Helix 13	AB4	E	208	224	Right-handed alpha
Helix 14	AB5	E	244	318	Right-handed alpha
Helix 15	AB6	E	318	338	Right-handed alpha
Helix 16	AB7	F	80	96	Right-handed alpha
Helix 17	AB8	F	169	176	Right-handed alpha
Helix 18	AB9	F	179	197	Right-handed alpha
Helix 19	AC1	F	200	208	Right-handed alpha
Helix 20	AC2	F	210	225	Right-handed alpha
Helix 21	AC3	F	244	246	Right-handed 310
Helix 22	AC4	F	247	318	Right-handed alpha
Helix 23	AC5	F	318	337	Right-handed alpha
Helix 24	AC6	G	2	19	Right-handed alpha
Helix 25	AC7	G	99	107	Right-handed alpha
Helix 26	AC8	G	108	110	Right-handed 310
Helix 27	AC9	G	111	133	Right-handed alpha
Helix 28	AD1	G	135	142	Right-handed alpha
Helix 29	AD2	G	145	157	Right-handed alpha
Helix 30	AD3	G	216	289	Right-handed alpha
Helix 31	AD4	G	290	308	Right-handed alpha
Helix 32	AD5	G	320	326	Right-handed 310
Helix 33	AD6	H	2	19	Right-handed alpha
Helix 34	AD7	H	99	107	Right-handed alpha
Helix 35	AD8	H	111	134	Right-handed alpha
Helix 36	AD9	H	135	141	Right-handed alpha
Helix 37	AE1	H	146	156	Right-handed alpha
Helix 38	AE2	H	218	288	Right-handed alpha
Helix 39	AE3	H	290	307	Right-handed alpha
Helix 40	AE4	H	321	326	Right-handed 310
Helix 41	AE5	I	2	19	Right-handed alpha
Helix 42	AE6	I	99	107	Right-handed alpha
Helix 43	AE7	I	111	132	Right-handed alpha
Helix 44	AE8	I	135	147	Right-handed alpha
Helix 45	AE9	I	147	158	Right-handed alpha
Helix 46	AF1	I	216	288	Right-handed alpha
Helix 47	AF2	I	290	307	Right-handed alpha
Helix 48	AF3	I	321	326	Right-handed 310
Helix 49	AF4	U	80	96	Right-handed alpha
Helix 50	AF5	U	169	176	Right-handed alpha
Helix 51	AF6	U	179	199	Right-handed alpha
Helix 52	AF7	U	200	228	Right-handed alpha
Helix 53	AF8	U	244	318	Right-handed alpha
Helix 54	AF9	U	318	338	Right-handed alpha
Helix 55	AG1	e	33	43	Right-handed alpha
Helix 56	AG2	e	74	84	Right-handed alpha
Helix 57	AG3	f	33	43	Right-handed alpha
Helix 58	AG4	f	75	84	Right-handed alpha

There are 29 sheets in PDB entry 7VHQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	32	first strand
Strand 2	A	65	69	parallel
Strand 3	A	55	60	anti-parallel
Strand 4	A	46	52	anti-parallel
Strand 5	A	87	89	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	69	first strand
Strand 2	B	55	60	anti-parallel
Strand 3	B	46	52	anti-parallel
Strand 4	B	87	89	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	69	first strand
Strand 2	C	55	60	anti-parallel
Strand 3	C	46	52	anti-parallel
Strand 4	C	87	89	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	69	first strand
Strand 2	D	55	60	anti-parallel
Strand 3	D	46	52	anti-parallel
Strand 4	D	87	90	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	97	98	first strand
Strand 2	E	123	124	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	113	118	first strand
Strand 2	E	104	110	anti-parallel
Strand 3	E	130	136	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	141	150	first strand
Strand 2	E	156	167	anti-parallel
Strand 3	E	231	240	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	339	341	first strand
Strand 2	G	313	315	parallel
Strand 3	E	339	342	parallel
Strand 4	H	313	316	parallel
Strand 5	U	339	342	parallel
Strand 6	I	313	316	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	97	98	first strand
Strand 2	F	123	124	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	113	118	first strand
Strand 2	F	104	110	anti-parallel
Strand 3	F	130	136	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	141	150	first strand
Strand 2	F	156	167	anti-parallel
Strand 3	F	231	240	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	20	22	first strand
Strand 2	G	52	54	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	27	33	first strand
Strand 2	G	60	66	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	39	40	first strand
Strand 2	G	44	45	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	70	80	first strand
Strand 2	G	86	97	anti-parallel
Strand 3	G	203	214	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	21	22	first strand
Strand 2	H	52	53	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	47	48	first strand
Strand 2	H	27	33	anti-parallel
Strand 3	H	60	66	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	39	40	first strand
Strand 2	H	44	45	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	70	80	first strand
Strand 2	H	86	96	anti-parallel
Strand 3	H	204	213	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	20	21	first strand
Strand 2	I	53	54	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	27	28	first strand
Strand 2	I	65	66	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	32	33	first strand
Strand 2	I	60	61	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	70	74	first strand
Strand 2	I	86	97	anti-parallel
Strand 3	I	79	80	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	70	74	first strand
Strand 2	I	86	97	anti-parallel
Strand 3	I	203	214	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	97	100	first strand
Strand 2	U	121	124	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	116	118	first strand
Strand 2	U	104	110	anti-parallel
Strand 3	U	130	136	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	141	150	first strand
Strand 2	U	156	167	anti-parallel
Strand 3	U	231	240	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	65	69	first strand
Strand 2	e	55	60	anti-parallel
Strand 3	e	46	51	anti-parallel
Strand 4	e	87	89	parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	65	69	first strand
Strand 2	f	55	60	anti-parallel
Strand 3	f	46	52	anti-parallel
Strand 4	f	87	90	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VHQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VHQ