Analysis of interatomic Contacts of Structural Units in PDB entry:
7VHV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VHV entry

There are 4 chains in PDB entry 7VHV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	THR 2	GLY 485
C	THR 2	GLY 485
A	MET 1	GLY 485
B	MET 1	GLY 485

There are 77 helices in PDB entry 7VHV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	3	15	Right-handed alpha
Helix 2	AA2	D	30	45	Right-handed alpha
Helix 3	AA3	D	59	72	Right-handed alpha
Helix 4	AA4	D	83	95	Right-handed alpha
Helix 5	AA5	D	117	122	Right-handed alpha
Helix 6	AA6	D	158	172	Right-handed alpha
Helix 7	AA7	D	189	200	Right-handed alpha
Helix 8	AA8	D	209	215	Right-handed alpha
Helix 9	AA9	D	215	226	Right-handed alpha
Helix 10	AB1	D	234	242	Right-handed alpha
Helix 11	AB2	D	266	277	Right-handed alpha
Helix 12	AB3	D	288	292	Right-handed 310
Helix 13	AB4	D	301	308	Right-handed alpha
Helix 14	AB5	D	344	351	Right-handed alpha
Helix 15	AB6	D	354	358	Right-handed 310
Helix 16	AB7	D	381	383	Right-handed 310
Helix 17	AB8	D	392	402	Right-handed alpha
Helix 18	AB9	D	439	451	Right-handed alpha
Helix 19	AC1	D	452	456	Right-handed 310
Helix 20	AC2	D	475	484	Right-handed alpha
Helix 21	AC3	C	3	15	Right-handed alpha
Helix 22	AC4	C	30	45	Right-handed alpha
Helix 23	AC5	C	58	72	Right-handed alpha
Helix 24	AC6	C	83	95	Right-handed alpha
Helix 25	AC7	C	117	122	Right-handed alpha
Helix 26	AC8	C	158	172	Right-handed alpha
Helix 27	AC9	C	189	200	Right-handed alpha
Helix 28	AD1	C	209	215	Right-handed alpha
Helix 29	AD2	C	215	226	Right-handed alpha
Helix 30	AD3	C	234	242	Right-handed alpha
Helix 31	AD4	C	266	277	Right-handed alpha
Helix 32	AD5	C	288	292	Right-handed 310
Helix 33	AD6	C	301	308	Right-handed alpha
Helix 34	AD7	C	344	351	Right-handed alpha
Helix 35	AD8	C	393	402	Right-handed alpha
Helix 36	AD9	C	435	448	Right-handed alpha
Helix 37	AE1	C	452	456	Right-handed 310
Helix 38	AE2	C	475	484	Right-handed alpha
Helix 39	AE3	A	3	15	Right-handed alpha
Helix 40	AE4	A	30	44	Right-handed alpha
Helix 41	AE5	A	59	72	Right-handed alpha
Helix 42	AE6	A	83	95	Right-handed alpha
Helix 43	AE7	A	117	123	Right-handed alpha
Helix 44	AE8	A	158	172	Right-handed alpha
Helix 45	AE9	A	189	200	Right-handed alpha
Helix 46	AF1	A	209	215	Right-handed alpha
Helix 47	AF2	A	215	226	Right-handed alpha
Helix 48	AF3	A	234	242	Right-handed alpha
Helix 49	AF4	A	266	277	Right-handed alpha
Helix 50	AF5	A	288	292	Right-handed 310
Helix 51	AF6	A	301	308	Right-handed alpha
Helix 52	AF7	A	344	351	Right-handed alpha
Helix 53	AF8	A	354	358	Right-handed 310
Helix 54	AF9	A	393	402	Right-handed alpha
Helix 55	AG1	A	435	449	Right-handed alpha
Helix 56	AG2	A	452	456	Right-handed 310
Helix 57	AG3	A	475	484	Right-handed alpha
Helix 58	AG4	B	3	15	Right-handed alpha
Helix 59	AG5	B	30	45	Right-handed alpha
Helix 60	AG6	B	59	71	Right-handed alpha
Helix 61	AG7	B	83	95	Right-handed alpha
Helix 62	AG8	B	117	122	Right-handed alpha
Helix 63	AG9	B	158	172	Right-handed alpha
Helix 64	AH1	B	188	190	Right-handed 310
Helix 65	AH2	B	191	200	Right-handed alpha
Helix 66	AH3	B	209	215	Right-handed alpha
Helix 67	AH4	B	215	226	Right-handed alpha
Helix 68	AH5	B	234	242	Right-handed alpha
Helix 69	AH6	B	266	277	Right-handed alpha
Helix 70	AH7	B	288	292	Right-handed 310
Helix 71	AH8	B	301	308	Right-handed alpha
Helix 72	AH9	B	344	351	Right-handed alpha
Helix 73	AI1	B	354	358	Right-handed 310
Helix 74	AI2	B	393	402	Right-handed alpha
Helix 75	AI3	B	435	449	Right-handed alpha
Helix 76	AI4	B	452	456	Right-handed 310
Helix 77	AI5	B	475	485	Right-handed alpha

There are 28 sheets in PDB entry 7VHV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	29	first strand
Strand 2	D	19	23	anti-parallel
Strand 3	D	204	207	parallel
Strand 4	D	179	182	parallel
Strand 5	D	230	233	parallel
Strand 6	D	257	261	parallel
Strand 7	D	281	286	parallel
Strand 8	D	296	299	anti-parallel
Strand 9	D	315	316	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	79	first strand
Strand 2	D	51	55	parallel
Strand 3	D	98	101	parallel
Strand 4	D	113	116	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	138	143	first strand
Strand 2	D	153	157	anti-parallel
Strand 3	D	340	341	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	321	324	first strand
Strand 2	D	329	333	anti-parallel
Strand 3	D	360	370	anti-parallel
Strand 4	D	352	353	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	321	324	first strand
Strand 2	D	329	333	anti-parallel
Strand 3	D	360	370	anti-parallel
Strand 4	D	373	379	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	384	386	first strand
Strand 2	D	389	391	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	406	415	first strand
Strand 2	D	420	429	anti-parallel
Strand 3	D	459	462	parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	29	first strand
Strand 2	C	19	23	anti-parallel
Strand 3	C	204	207	parallel
Strand 4	C	179	182	parallel
Strand 5	C	230	233	parallel
Strand 6	C	257	260	parallel
Strand 7	C	281	286	parallel
Strand 8	C	296	299	anti-parallel
Strand 9	C	315	316	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	79	first strand
Strand 2	C	51	55	parallel
Strand 3	C	98	101	parallel
Strand 4	C	113	116	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	143	first strand
Strand 2	C	153	157	anti-parallel
Strand 3	C	340	341	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	321	324	first strand
Strand 2	C	329	333	anti-parallel
Strand 3	C	360	370	anti-parallel
Strand 4	C	352	353	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	321	324	first strand
Strand 2	C	329	333	anti-parallel
Strand 3	C	360	370	anti-parallel
Strand 4	C	373	379	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	383	386	first strand
Strand 2	C	389	392	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	406	415	first strand
Strand 2	C	420	429	anti-parallel
Strand 3	C	459	462	parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	29	first strand
Strand 2	A	19	23	anti-parallel
Strand 3	A	204	207	parallel
Strand 4	A	179	182	parallel
Strand 5	A	230	233	parallel
Strand 6	A	257	260	parallel
Strand 7	A	281	286	parallel
Strand 8	A	296	299	anti-parallel
Strand 9	A	315	316	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	79	first strand
Strand 2	A	51	55	parallel
Strand 3	A	98	101	parallel
Strand 4	A	113	116	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	143	first strand
Strand 2	A	153	157	anti-parallel
Strand 3	A	340	341	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	324	first strand
Strand 2	A	329	333	anti-parallel
Strand 3	A	360	370	anti-parallel
Strand 4	A	352	353	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	324	first strand
Strand 2	A	329	333	anti-parallel
Strand 3	A	360	370	anti-parallel
Strand 4	A	373	379	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	383	386	first strand
Strand 2	A	389	392	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	406	416	first strand
Strand 2	A	419	429	anti-parallel
Strand 3	A	459	462	parallel

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There are 9 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	29	first strand
Strand 2	B	19	23	anti-parallel
Strand 3	B	204	207	parallel
Strand 4	B	179	182	parallel
Strand 5	B	230	233	parallel
Strand 6	B	257	260	parallel
Strand 7	B	281	286	parallel
Strand 8	B	296	299	anti-parallel
Strand 9	B	315	316	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	79	first strand
Strand 2	B	51	55	parallel
Strand 3	B	98	101	parallel
Strand 4	B	113	116	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	143	first strand
Strand 2	B	153	157	anti-parallel
Strand 3	B	340	341	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	324	first strand
Strand 2	B	329	333	anti-parallel
Strand 3	B	360	370	anti-parallel
Strand 4	B	352	353	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	324	first strand
Strand 2	B	329	333	anti-parallel
Strand 3	B	360	370	anti-parallel
Strand 4	B	373	379	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	383	386	first strand
Strand 2	B	389	392	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	406	416	first strand
Strand 2	B	419	429	anti-parallel
Strand 3	B	459	462	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VHV

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VHV