Analysis of interatomic Contacts of Structural Units in PDB entry:
7VI0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VI0 entry

There are 2 chains in PDB entry 7VI0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 1162ASP 1664
B
 TYR 1162GLN 1661
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 7VI0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1202 1207Right-handed alpha
Helix 2
AA2
A
1229 1231Right-handed 310
Helix 3
AA3
A
1256 1260Right-handed alpha
Helix 4
AA4
A
1272 1279Right-handed alpha
Helix 5
AA5
A
1296 1314Right-handed alpha
Helix 6
AA6
A
1336 1344Right-handed alpha
Helix 7
AA7
A
1406 1408Right-handed 310
Helix 8
AA8
A
1409 1429Right-handed alpha
Helix 9
AA9
A
1459 1477Right-handed alpha
Helix 10
AB1
A
1486 1493Right-handed alpha
Helix 11
AB2
A
1497 1501Right-handed 310
Helix 12
AB3
A
1507 1520Right-handed alpha
Helix 13
AB4
A
1583 1591Right-handed alpha
Helix 14
AB5
A
1602 1607Right-handed 310
Helix 15
AB6
A
1621 1625Right-handed 310
Helix 16
AB7
A
1627 1637Right-handed alpha
Helix 17
AB8
A
1643 1664Right-handed alpha
Helix 18
AB9
B
1202 1207Right-handed alpha
Helix 19
AC1
B
1229 1231Right-handed 310
Helix 20
AC2
B
1256 1260Right-handed alpha
Helix 21
AC3
B
1272 1279Right-handed alpha
Helix 22
AC4
B
1296 1314Right-handed alpha
Helix 23
AC5
B
1336 1344Right-handed alpha
Helix 24
AC6
B
1406 1408Right-handed 310
Helix 25
AC7
B
1409 1429Right-handed alpha
Helix 26
AC8
B
1459 1477Right-handed alpha
Helix 27
AC9
B
1486 1493Right-handed alpha
Helix 28
AD1
B
1497 1501Right-handed 310
Helix 29
AD2
B
1507 1520Right-handed alpha
Helix 30
AD3
B
1583 1591Right-handed alpha
Helix 31
AD4
B
1621 1625Right-handed 310
Helix 32
AD5
B
1627 1637Right-handed alpha
Helix 33
AD6
B
1643 1660Right-handed alpha
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There are 9 sheets in PDB entry 7VI0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1198 1201first strand
Strand 2
A
1190 1194anti-parallel
Strand 3
A
1232 1235anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1212 1215first strand
Strand 2
A
1224 1227anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1244 1246first strand
Strand 2
A
1253 1255anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1321 1334first strand
Strand 2
A
1352 1365anti-parallel
Strand 3
A
1370 1381anti-parallel
Strand 4
A
1392 1400anti-parallel
Strand 5
A
1432 1436parallel
Strand 6
A
1595 1599anti-parallel
Strand 7
A
1482 1485anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1175 1176first strand
Strand 2
B
1184 1185anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1198 1201first strand
Strand 2
B
1190 1194anti-parallel
Strand 3
B
1232 1235anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1212 1215first strand
Strand 2
B
1224 1227anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1244 1246first strand
Strand 2
B
1253 1255anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1321 1334first strand
Strand 2
B
1352 1365anti-parallel
Strand 3
B
1370 1381anti-parallel
Strand 4
B
1392 1400anti-parallel
Strand 5
B
1432 1436parallel
Strand 6
B
1595 1599anti-parallel
Strand 7
B
1482 1485anti-parallel
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