Analysis of interatomic Contacts of Structural Units in PDB entry:
7VI8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VI8 entry

There are 2 chains in PDB entry 7VI8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1VAL 251
B
 GLU 1GLU 253
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 7VI8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 27Right-handed alpha
Helix 2
AA2
A
41 51Right-handed alpha
Helix 3
AA3
A
84 91Right-handed alpha
Helix 4
AA4
A
95 115Right-handed alpha
Helix 5
AA5
A
125 130Right-handed 310
Helix 6
AA6
A
133 145Right-handed alpha
Helix 7
AA7
A
151 158Right-handed alpha
Helix 8
AA8
A
181 195Right-handed alpha
Helix 9
AA9
A
210 215Right-handed alpha
Helix 10
AB1
A
220 231Right-handed alpha
Helix 11
AB2
A
231 241Right-handed alpha
Helix 12
AB3
A
247 251Right-handed 310
Helix 13
AB4
B
14 27Right-handed alpha
Helix 14
AB5
B
41 51Right-handed alpha
Helix 15
AB6
B
84 92Right-handed alpha
Helix 16
AB7
B
95 115Right-handed alpha
Helix 17
AB8
B
125 130Right-handed 310
Helix 18
AB9
B
133 145Right-handed alpha
Helix 19
AC1
B
151 158Right-handed alpha
Helix 20
AC2
B
181 195Right-handed alpha
Helix 21
AC3
B
210 215Right-handed alpha
Helix 22
AC4
B
220 231Right-handed alpha
Helix 23
AC5
B
231 241Right-handed alpha
Helix 24
AC6
B
247 251Right-handed 310
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There are 4 sheets in PDB entry 7VI8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
120 123parallel
Strand 3
A
56 61parallel
Strand 4
A
32 35parallel
Strand 5
A
2 11parallel
Strand 6
A
199 204parallel
Strand 7
A
170 172parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
120 123parallel
Strand 3
A
56 61parallel
Strand 4
A
32 35parallel
Strand 5
A
2 11parallel
Strand 6
A
243 246parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 148first strand
Strand 2
B
120 123parallel
Strand 3
B
56 61parallel
Strand 4
B
32 35parallel
Strand 5
B
2 11parallel
Strand 6
B
199 204parallel
Strand 7
B
170 172parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 148first strand
Strand 2
B
120 123parallel
Strand 3
B
56 61parallel
Strand 4
B
32 35parallel
Strand 5
B
2 11parallel
Strand 6
B
243 245parallel
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