Analysis of interatomic Contacts of Structural Units in PDB entry:
7VIA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VIA entry

There are 7 chains in PDB entry 7VIA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 7	ALA 341
B	ALA 7	ALA 341
C	ALA 7	ALA 341
D	ALA 7	ALA 341
E	ALA 7	ALA 341
F	ALA 7	ALA 341
G	ALA 7	ALA 341

There are 67 helices in PDB entry 7VIA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	44	Right-handed 310
Helix 2	AA2	A	97	102	Right-handed 310
Helix 3	AA3	A	103	138	Right-handed alpha
Helix 4	AA4	A	157	161	Right-handed 310
Helix 5	AA5	A	180	190	Right-handed alpha
Helix 6	AA6	A	211	218	Right-handed alpha
Helix 7	AA7	A	228	235	Right-handed alpha
Helix 8	AA8	A	290	296	Right-handed alpha
Helix 9	AA9	A	331	335	Right-handed 310
Helix 10	AB1	B	103	138	Right-handed alpha
Helix 11	AB2	B	157	161	Right-handed 310
Helix 12	AB3	B	180	189	Right-handed alpha
Helix 13	AB4	B	203	211	Right-handed alpha
Helix 14	AB5	B	211	218	Right-handed alpha
Helix 15	AB6	B	227	234	Right-handed alpha
Helix 16	AB7	B	290	296	Right-handed alpha
Helix 17	AB8	B	331	335	Right-handed 310
Helix 18	AB9	C	42	44	Right-handed 310
Helix 19	AC1	C	97	103	Right-handed alpha
Helix 20	AC2	C	103	138	Right-handed alpha
Helix 21	AC3	C	180	190	Right-handed alpha
Helix 22	AC4	C	201	210	Right-handed alpha
Helix 23	AC5	C	211	216	Right-handed alpha
Helix 24	AC6	C	227	233	Right-handed alpha
Helix 25	AC7	C	290	296	Right-handed alpha
Helix 26	AC8	C	331	335	Right-handed 310
Helix 27	AC9	D	42	44	Right-handed 310
Helix 28	AD1	D	98	102	Right-handed 310
Helix 29	AD2	D	103	138	Right-handed alpha
Helix 30	AD3	D	157	161	Right-handed 310
Helix 31	AD4	D	180	188	Right-handed alpha
Helix 32	AD5	D	189	192	Right-handed 310
Helix 33	AD6	D	201	206	Right-handed alpha
Helix 34	AD7	D	211	218	Right-handed alpha
Helix 35	AD8	D	227	235	Right-handed alpha
Helix 36	AD9	D	290	296	Right-handed alpha
Helix 37	AE1	D	331	333	Right-handed 310
Helix 38	AE2	E	40	44	Right-handed 310
Helix 39	AE3	E	97	102	Right-handed 310
Helix 40	AE4	E	103	138	Right-handed alpha
Helix 41	AE5	E	157	161	Right-handed 310
Helix 42	AE6	E	180	185	Right-handed alpha
Helix 43	AE7	E	188	192	Right-handed 310
Helix 44	AE8	E	201	211	Right-handed alpha
Helix 45	AE9	E	211	218	Right-handed alpha
Helix 46	AF1	E	228	235	Right-handed alpha
Helix 47	AF2	E	290	296	Right-handed alpha
Helix 48	AF3	F	40	44	Right-handed 310
Helix 49	AF4	F	99	102	Right-handed 310
Helix 50	AF5	F	103	138	Right-handed alpha
Helix 51	AF6	F	157	161	Right-handed 310
Helix 52	AF7	F	180	187	Right-handed alpha
Helix 53	AF8	F	201	211	Right-handed alpha
Helix 54	AF9	F	211	218	Right-handed alpha
Helix 55	AG1	F	227	236	Right-handed 310
Helix 56	AG2	F	290	296	Right-handed alpha
Helix 57	AG3	G	40	44	Right-handed 310
Helix 58	AG4	G	98	102	Right-handed 310
Helix 59	AG5	G	103	133	Right-handed alpha
Helix 60	AG6	G	133	138	Right-handed alpha
Helix 61	AG7	G	157	161	Right-handed 310
Helix 62	AG8	G	180	190	Right-handed alpha
Helix 63	AG9	G	201	210	Right-handed alpha
Helix 64	AH1	G	211	218	Right-handed alpha
Helix 65	AH2	G	228	235	Right-handed alpha
Helix 66	AH3	G	290	296	Right-handed alpha
Helix 67	AH4	G	331	335	Right-handed 310

There are 48 sheets in PDB entry 7VIA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	33	first strand
Strand 2	A	281	285	parallel
Strand 3	A	328	329	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	40	first strand
Strand 2	A	72	73	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	83	first strand
Strand 2	A	317	322	anti-parallel
Strand 3	A	304	309	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	144	first strand
Strand 2	A	147	153	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	244	first strand
Strand 2	A	249	253	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	258	first strand
Strand 2	A	263	265	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	274	first strand
Strand 2	A	336	339	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	83	first strand
Strand 2	B	316	322	anti-parallel
Strand 3	B	304	310	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	142	first strand
Strand 2	B	150	153	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	244	first strand
Strand 2	B	249	253	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	258	first strand
Strand 2	B	263	265	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	274	first strand
Strand 2	B	336	339	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	282	first strand
Strand 2	B	328	329	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	40	first strand
Strand 2	C	72	73	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	83	first strand
Strand 2	C	317	322	anti-parallel
Strand 3	C	304	309	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	142	first strand
Strand 2	C	150	153	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	244	first strand
Strand 2	C	249	253	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	256	258	first strand
Strand 2	C	263	265	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	274	first strand
Strand 2	C	336	339	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	281	282	first strand
Strand 2	C	328	329	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	33	first strand
Strand 2	D	284	285	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	40	first strand
Strand 2	D	72	73	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	63	first strand
Strand 2	E	81	82	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	83	first strand
Strand 2	D	316	321	anti-parallel
Strand 3	D	305	310	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	142	first strand
Strand 2	D	150	151	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	239	245	first strand
Strand 2	D	248	253	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	256	258	first strand
Strand 2	D	263	265	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	275	first strand
Strand 2	D	335	339	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	281	282	first strand
Strand 2	D	328	329	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	33	first strand
Strand 2	E	284	285	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	140	142	first strand
Strand 2	E	150	152	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	239	244	first strand
Strand 2	E	249	253	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	256	258	first strand
Strand 2	E	263	265	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	274	first strand
Strand 2	E	336	339	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	281	282	first strand
Strand 2	E	328	329	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	303	309	first strand
Strand 2	E	317	323	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	81	83	first strand
Strand 2	F	317	322	anti-parallel
Strand 3	F	304	309	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	139	144	first strand
Strand 2	F	147	153	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	243	245	first strand
Strand 2	F	248	250	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	256	258	first strand
Strand 2	F	263	265	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	271	274	first strand
Strand 2	F	336	339	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	281	282	first strand
Strand 2	F	328	329	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	32	33	first strand
Strand 2	G	284	285	parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	81	83	first strand
Strand 2	G	317	321	anti-parallel
Strand 3	G	305	309	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	140	144	first strand
Strand 2	G	147	152	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	239	245	first strand
Strand 2	G	248	253	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	256	258	first strand
Strand 2	G	263	265	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	274	first strand
Strand 2	G	336	339	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VIA

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VIA