Analysis of interatomic Contacts of Structural Units in PDB entry:
7VIB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VIB entry

There are 4 chains in PDB entry 7VIB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 19ASP 615
B
 THR 333GLY 526
C
 SER 19ASP 615
D
 ASN 334GLY 526
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 84 helices in PDB entry 7VIB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 54Right-handed alpha
Helix 2
AA2
A
55 81Right-handed alpha
Helix 3
AA3
A
82 83Right-handed 310
Helix 4
AA4
A
84 88Right-handed 310
Helix 5
AA5
A
90 102Right-handed alpha
Helix 6
AA6
A
103 108Right-handed 310
Helix 7
AA7
A
109 130Right-handed alpha
Helix 8
AA8
A
146 155Right-handed alpha
Helix 9
AA9
A
157 172Right-handed alpha
Helix 10
AB1
A
172 194Right-handed alpha
Helix 11
AB2
A
198 205Right-handed alpha
Helix 12
AB3
A
206 208Right-handed 310
Helix 13
AB4
A
219 231Right-handed alpha
Helix 14
AB5
A
233 252Right-handed alpha
Helix 15
AB6
A
265 267Right-handed 310
Helix 16
AB7
A
275 283Right-handed 310
Helix 17
AB8
A
293 300Right-handed alpha
Helix 18
AB9
A
303 317Right-handed alpha
Helix 19
AC1
A
324 331Right-handed alpha
Helix 20
AC2
A
369 371Right-handed 310
Helix 21
AC3
A
372 385Right-handed alpha
Helix 22
AC4
A
386 388Right-handed 310
Helix 23
AC5
A
399 414Right-handed alpha
Helix 24
AC6
A
414 421Right-handed alpha
Helix 25
AC7
A
431 447Right-handed alpha
Helix 26
AC8
A
448 466Right-handed alpha
Helix 27
AC9
A
469 471Right-handed 310
Helix 28
AD1
A
472 486Right-handed alpha
Helix 29
AD2
A
499 503Right-handed 310
Helix 30
AD3
A
505 509Right-handed 310
Helix 31
AD4
A
512 530Right-handed alpha
Helix 32
AD5
A
538 542Right-handed 310
Helix 33
AD6
A
547 559Right-handed alpha
Helix 34
AD7
A
560 564Right-handed 310
Helix 35
AD8
A
565 575Right-handed alpha
Helix 36
AD9
A
581 588Right-handed alpha
Helix 37
AE1
A
588 599Right-handed alpha
Helix 38
AE2
B
338 343Right-handed alpha
Helix 39
AE3
B
349 353Right-handed 310
Helix 40
AE4
B
383 389Right-handed alpha
Helix 41
AE5
B
405 410Right-handed 310
Helix 42
AE6
B
416 422Right-handed alpha
Helix 43
AE7
B
438 443Right-handed alpha
Helix 44
AE8
B
502 505Right-handed 310
Helix 45
AE9
C
21 52Right-handed alpha
Helix 46
AF1
C
55 81Right-handed alpha
Helix 47
AF2
C
90 102Right-handed alpha
Helix 48
AF3
C
103 107Right-handed 310
Helix 49
AF4
C
109 130Right-handed alpha
Helix 50
AF5
C
147 155Right-handed alpha
Helix 51
AF6
C
157 171Right-handed alpha
Helix 52
AF7
C
175 193Right-handed alpha
Helix 53
AF8
C
198 205Right-handed alpha
Helix 54
AF9
C
206 208Right-handed 310
Helix 55
AG1
C
220 252Right-handed alpha
Helix 56
AG2
C
265 267Right-handed 310
Helix 57
AG3
C
274 277Right-handed 310
Helix 58
AG4
C
278 283Right-handed alpha
Helix 59
AG5
C
293 300Right-handed alpha
Helix 60
AG6
C
303 318Right-handed alpha
Helix 61
AG7
C
324 331Right-handed alpha
Helix 62
AG8
C
365 385Right-handed alpha
Helix 63
AG9
C
389 393Right-handed 310
Helix 64
AH1
C
399 414Right-handed alpha
Helix 65
AH2
C
414 419Right-handed alpha
Helix 66
AH3
C
431 446Right-handed alpha
Helix 67
AH4
C
448 465Right-handed alpha
Helix 68
AH5
C
469 471Right-handed 310
Helix 69
AH6
C
472 484Right-handed alpha
Helix 70
AH7
C
499 502Right-handed 310
Helix 71
AH8
C
503 508Right-handed alpha
Helix 72
AH9
C
513 530Right-handed alpha
Helix 73
AI1
C
538 542Right-handed 310
Helix 74
AI2
C
547 559Right-handed alpha
Helix 75
AI3
C
565 572Right-handed alpha
Helix 76
AI4
C
581 588Right-handed alpha
Helix 77
AI5
C
588 599Right-handed alpha
Helix 78
AI6
D
338 343Right-handed alpha
Helix 79
AI7
D
349 353Right-handed 310
Helix 80
AI8
D
386 390Right-handed 310
Helix 81
AI9
D
405 407Right-handed 310
Helix 82
AJ1
D
416 422Right-handed alpha
Helix 83
AJ2
D
438 443Right-handed alpha
Helix 84
AJ3
D
502 505Right-handed 310
Back to top of page

There are 12 sheets in PDB entry 7VIB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 134first strand
Strand 2
A
137 143anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
487 488parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 352first strand
Strand 2
A
355 359anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 358first strand
Strand 2
B
395 403anti-parallel
Strand 3
B
507 514anti-parallel
Strand 4
B
431 437anti-parallel
Strand 5
B
376 379anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
452 454first strand
Strand 2
B
492 494anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
473 474first strand
Strand 2
B
488 489anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
131 133first strand
Strand 2
C
141 143anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
262 263first strand
Strand 2
C
487 488parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
347 352first strand
Strand 2
C
355 359anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
354 357first strand
Strand 2
D
396 403anti-parallel
Strand 3
D
507 514anti-parallel
Strand 4
D
431 437anti-parallel
Strand 5
D
376 380anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
451 454first strand
Strand 2
D
492 495anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
473 474first strand
Strand 2
D
488 489anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il