Analysis of interatomic Contacts of Structural Units in PDB entry:
7VID


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VID entry

There are 2 chains in PDB entry 7VID (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 339
B
 MET 1GLN 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 7VID. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 9Right-handed alpha
Helix 2
AA2
A
48 70Right-handed alpha
Helix 3
AA3
A
91 104Right-handed alpha
Helix 4
AA4
A
117 128Right-handed alpha
Helix 5
AA5
A
140 161Right-handed alpha
Helix 6
AA6
A
176 190Right-handed alpha
Helix 7
AA7
A
199 211Right-handed alpha
Helix 8
AA8
A
216 221Right-handed alpha
Helix 9
AA9
A
238 244Right-handed alpha
Helix 10
AB1
A
262 270Right-handed alpha
Helix 11
AB2
A
276 281Right-handed alpha
Helix 12
AB3
A
282 294Right-handed alpha
Helix 13
AB4
A
296 321Right-handed alpha
Helix 14
AB5
A
324 339Right-handed alpha
Helix 15
AB6
B
2 9Right-handed alpha
Helix 16
AB7
B
48 70Right-handed alpha
Helix 17
AB8
B
89 103Right-handed alpha
Helix 18
AB9
B
117 125Right-handed alpha
Helix 19
AC1
B
140 161Right-handed alpha
Helix 20
AC2
B
176 190Right-handed alpha
Helix 21
AC3
B
199 211Right-handed alpha
Helix 22
AC4
B
216 223Right-handed 310
Helix 23
AC5
B
238 245Right-handed alpha
Helix 24
AC6
B
261 270Right-handed alpha
Helix 25
AC7
B
276 281Right-handed alpha
Helix 26
AC8
B
282 293Right-handed alpha
Helix 27
AC9
B
296 305Right-handed alpha
Helix 28
AD1
B
305 322Right-handed alpha
Helix 29
AD2
B
324 339Right-handed alpha
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There are 4 sheets in PDB entry 7VID. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
75 82parallel
Strand 3
A
37 38parallel
Strand 4
A
108 109parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
75 82parallel
Strand 3
A
23 29anti-parallel
Strand 4
A
12 18anti-parallel
Strand 5
B
12 18anti-parallel
Strand 6
B
23 31anti-parallel
Strand 7
B
75 82anti-parallel
Strand 8
B
37 44parallel
Strand 9
B
108 112parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 214first strand
Strand 2
A
192 196parallel
Strand 3
A
169 173parallel
Strand 4
A
227 230parallel
Strand 5
A
249 250parallel
Strand 6
A
273 274parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 214first strand
Strand 2
B
192 196parallel
Strand 3
B
169 173parallel
Strand 4
B
227 230parallel
Strand 5
B
249 250parallel
Strand 6
B
273 274parallel
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