Analysis of interatomic Contacts of Structural Units in PDB entry:
7VIF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VIF entry

There are 5 chains in PDB entry 7VIF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 2	ASN 339
C	THR 6	ARG 62
E	ASP 1	LYS 248
F	ASP 23	ARG 324
D	CYS 3	PHE 354

There are 30 helices in PDB entry 7VIF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	24	Right-handed alpha
Helix 2	AA2	A	28	33	Right-handed alpha
Helix 3	AA3	C	7	23	Right-handed alpha
Helix 4	AA4	C	29	44	Right-handed alpha
Helix 5	AA5	E	28	32	Right-handed 310
Helix 6	AA6	E	53	56	Right-handed 310
Helix 7	AA7	E	87	91	Right-handed 310
Helix 8	AA8	E	220	224	Right-handed 310
Helix 9	AA9	F	24	31	Right-handed alpha
Helix 10	AB1	F	49	73	Right-handed alpha
Helix 11	AB2	F	74	77	Right-handed 310
Helix 12	AB3	F	78	105	Right-handed alpha
Helix 13	AB4	F	106	111	Right-handed 310
Helix 14	AB5	F	113	148	Right-handed alpha
Helix 15	AB6	F	156	177	Right-handed alpha
Helix 16	AB7	F	178	181	Right-handed 310
Helix 17	AB8	F	187	191	Right-handed 310
Helix 18	AB9	F	199	235	Right-handed alpha
Helix 19	AC1	F	250	282	Right-handed alpha
Helix 20	AC2	F	293	314	Right-handed alpha
Helix 21	AC3	F	315	324	Right-handed alpha
Helix 22	AC4	D	6	32	Right-handed alpha
Helix 23	AC5	D	45	56	Right-handed alpha
Helix 24	AC6	D	207	216	Right-handed 310
Helix 25	AC7	D	228	232	Right-handed 310
Helix 26	AC8	D	241	255	Right-handed alpha
Helix 27	AC9	D	270	278	Right-handed alpha
Helix 28	AD1	D	282	286	Right-handed 310
Helix 29	AD2	D	295	310	Right-handed alpha
Helix 30	AD3	D	330	351	Right-handed alpha

There are 13 sheets in PDB entry 7VIF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	50	first strand
Strand 2	A	335	339	anti-parallel
Strand 3	A	326	330	anti-parallel
Strand 4	A	314	319	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	61	first strand
Strand 2	A	68	73	anti-parallel
Strand 3	A	77	82	anti-parallel
Strand 4	A	87	93	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	104	first strand
Strand 2	A	110	115	anti-parallel
Strand 3	A	120	124	anti-parallel
Strand 4	A	133	138	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	150	first strand
Strand 2	A	155	160	anti-parallel
Strand 3	A	164	169	anti-parallel
Strand 4	A	175	180	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	191	first strand
Strand 2	A	197	202	anti-parallel
Strand 3	A	207	211	anti-parallel
Strand 4	A	217	221	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	233	first strand
Strand 2	A	239	244	anti-parallel
Strand 3	A	249	253	anti-parallel
Strand 4	A	259	263	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	277	first strand
Strand 2	A	283	288	anti-parallel
Strand 3	A	293	297	anti-parallel
Strand 4	A	303	306	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	17	25	anti-parallel
Strand 3	E	78	84	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	115	119	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	33	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	115	119	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	110	111	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	140	141	first strand
Strand 2	E	155	161	anti-parallel
Strand 3	E	211	216	anti-parallel
Strand 4	E	203	208	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	149	first strand
Strand 2	E	243	247	parallel
Strand 3	E	226	231	anti-parallel
Strand 4	E	174	179	anti-parallel
Strand 5	E	185	190	anti-parallel
Strand 6	E	194	195	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	191	first strand
Strand 2	D	194	200	anti-parallel
Strand 3	D	33	40	parallel
Strand 4	D	220	226	parallel
Strand 5	D	263	269	parallel
Strand 6	D	319	323	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VIF

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VIF