Analysis of interatomic Contacts of Structural Units in PDB entry:
7VII

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VII entry

There are 14 chains in PDB entry 7VII (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 3	ALA 341
B	MET 3	ALA 341
C	MET 3	ALA 341
D	MET 3	ALA 341
E	MET 3	ALA 341
F	MET 3	ALA 341
G	MET 3	ALA 341
H	THR 2	VAL 110
I	THR 2	VAL 110
J	THR 2	VAL 110
K	THR 2	VAL 110
L	THR 2	VAL 110
M	THR 2	VAL 110
N	THR 2	VAL 110

There are 69 helices in PDB entry 7VII. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	103	138	Right-handed alpha
Helix 2	AA2	A	157	161	Right-handed 310
Helix 3	AA3	A	180	189	Right-handed alpha
Helix 4	AA4	A	205	211	Right-handed alpha
Helix 5	AA5	A	211	218	Right-handed alpha
Helix 6	AA6	A	290	296	Right-handed alpha
Helix 7	AA7	A	331	335	Right-handed 310
Helix 8	AA8	B	85	91	Right-handed 310
Helix 9	AA9	B	103	125	Right-handed alpha
Helix 10	AB1	B	125	138	Right-handed alpha
Helix 11	AB2	B	157	161	Right-handed 310
Helix 12	AB3	B	180	190	Right-handed alpha
Helix 13	AB4	B	203	210	Right-handed alpha
Helix 14	AB5	B	211	219	Right-handed alpha
Helix 15	AB6	B	290	296	Right-handed alpha
Helix 16	AB7	C	22	27	Right-handed alpha
Helix 17	AB8	C	85	89	Right-handed 310
Helix 18	AB9	C	103	138	Right-handed alpha
Helix 19	AC1	C	157	162	Right-handed 310
Helix 20	AC2	C	180	189	Right-handed alpha
Helix 21	AC3	C	203	210	Right-handed alpha
Helix 22	AC4	C	211	218	Right-handed alpha
Helix 23	AC5	C	290	296	Right-handed alpha
Helix 24	AC6	C	331	335	Right-handed 310
Helix 25	AC7	D	22	27	Right-handed alpha
Helix 26	AC8	D	103	138	Right-handed alpha
Helix 27	AC9	D	157	161	Right-handed 310
Helix 28	AD1	D	180	190	Right-handed alpha
Helix 29	AD2	D	205	210	Right-handed alpha
Helix 30	AD3	D	211	218	Right-handed alpha
Helix 31	AD4	D	290	297	Right-handed alpha
Helix 32	AD5	D	331	335	Right-handed 310
Helix 33	AD6	E	85	90	Right-handed alpha
Helix 34	AD7	E	103	138	Right-handed alpha
Helix 35	AD8	E	158	162	Right-handed 310
Helix 36	AD9	E	180	190	Right-handed alpha
Helix 37	AE1	E	205	210	Right-handed alpha
Helix 38	AE2	E	211	218	Right-handed alpha
Helix 39	AE3	E	290	296	Right-handed alpha
Helix 40	AE4	E	331	335	Right-handed 310
Helix 41	AE5	F	85	90	Right-handed alpha
Helix 42	AE6	F	103	138	Right-handed alpha
Helix 43	AE7	F	157	161	Right-handed 310
Helix 44	AE8	F	179	190	Right-handed alpha
Helix 45	AE9	F	205	211	Right-handed alpha
Helix 46	AF1	F	211	218	Right-handed alpha
Helix 47	AF2	F	290	297	Right-handed alpha
Helix 48	AF3	F	331	335	Right-handed 310
Helix 49	AF4	G	85	89	Right-handed 310
Helix 50	AF5	G	103	138	Right-handed alpha
Helix 51	AF6	G	157	161	Right-handed 310
Helix 52	AF7	G	180	190	Right-handed alpha
Helix 53	AF8	G	203	211	Right-handed alpha
Helix 54	AF9	G	212	215	Right-handed 310
Helix 55	AG1	G	225	234	Right-handed alpha
Helix 56	AG2	G	290	296	Right-handed alpha
Helix 57	AG3	G	331	335	Right-handed 310
Helix 58	AG4	H	84	86	Right-handed 310
Helix 59	AG5	H	94	100	Right-handed alpha
Helix 60	AG6	I	94	100	Right-handed alpha
Helix 61	AG7	J	84	86	Right-handed 310
Helix 62	AG8	J	94	100	Right-handed alpha
Helix 63	AG9	K	94	100	Right-handed alpha
Helix 64	AH1	L	94	100	Right-handed alpha
Helix 65	AH2	L	101	103	Right-handed 310
Helix 66	AH3	M	94	100	Right-handed alpha
Helix 67	AH4	M	101	103	Right-handed 310
Helix 68	AH5	N	84	86	Right-handed 310
Helix 69	AH6	N	94	99	Right-handed alpha

There are 64 sheets in PDB entry 7VII. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6, AG7, AG8, AG9, AH1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	9	first strand
Strand 2	F	38	40	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	10	first strand
Strand 2	A	40	42	parallel
Strand 3	A	70	71	anti-parallel
Strand 4	H	4	5	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	83	first strand
Strand 2	A	316	321	anti-parallel
Strand 3	A	305	310	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	144	first strand
Strand 2	A	147	153	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	228	first strand
Strand 2	A	243	244	anti-parallel
Strand 3	A	249	250	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	258	first strand
Strand 2	A	263	265	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	274	first strand
Strand 2	A	336	339	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	285	first strand
Strand 2	A	325	329	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	32	first strand
Strand 2	B	281	284	parallel
Strand 3	B	328	329	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	43	first strand
Strand 2	C	8	13	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	144	first strand
Strand 2	B	147	153	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	228	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	248	252	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	258	first strand
Strand 2	B	263	265	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	274	first strand
Strand 2	B	336	339	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	305	310	first strand
Strand 2	B	316	321	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	41	first strand
Strand 2	D	7	10	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	63	first strand
Strand 2	D	81	83	parallel
Strand 3	D	316	321	anti-parallel
Strand 4	D	305	310	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	83	first strand
Strand 2	C	316	321	anti-parallel
Strand 3	C	305	310	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	144	first strand
Strand 2	C	147	153	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	244	first strand
Strand 2	C	249	252	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	256	258	first strand
Strand 2	C	263	265	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	274	first strand
Strand 2	C	336	339	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	281	285	first strand
Strand 2	C	325	329	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	41	first strand
Strand 2	E	7	10	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	141	first strand
Strand 2	D	151	153	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	240	244	first strand
Strand 2	D	249	252	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	256	258	first strand
Strand 2	D	263	265	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	274	first strand
Strand 2	D	336	339	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	281	282	first strand
Strand 2	D	328	329	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	38	40	first strand
Strand 2	F	7	9	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	139	141	first strand
Strand 2	E	151	153	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	240	244	first strand
Strand 2	E	249	252	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	256	258	first strand
Strand 2	E	263	265	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	274	first strand
Strand 2	E	336	339	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	281	282	first strand
Strand 2	E	328	329	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	304	310	first strand
Strand 2	E	316	322	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	82	83	first strand
Strand 2	F	318	320	anti-parallel
Strand 3	F	306	307	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	139	144	first strand
Strand 2	F	147	153	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	243	244	first strand
Strand 2	F	249	250	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	256	258	first strand
Strand 2	F	263	265	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	271	273	first strand
Strand 2	F	337	339	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	281	282	first strand
Strand 2	F	328	329	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	40	42	first strand
Strand 2	G	70	72	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	82	83	first strand
Strand 2	G	316	321	anti-parallel
Strand 3	G	305	310	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	139	144	first strand
Strand 2	G	147	153	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	239	244	first strand
Strand 2	G	249	253	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	256	258	first strand
Strand 2	G	263	265	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	274	first strand
Strand 2	G	336	339	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	281	282	first strand
Strand 2	G	328	329	anti-parallel

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There are 5 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	21	25	first strand
Strand 2	H	72	76	anti-parallel
Strand 3	H	60	62	anti-parallel
Strand 4	H	37	40	anti-parallel
Strand 5	H	47	49	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	79	82	first strand
Strand 2	H	107	110	parallel

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There are 3 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	13	15	first strand
Strand 2	I	79	82	anti-parallel
Strand 3	I	107	110	parallel

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There are 5 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	21	25	first strand
Strand 2	I	72	76	anti-parallel
Strand 3	I	60	62	anti-parallel
Strand 4	I	37	40	anti-parallel
Strand 5	I	47	49	anti-parallel

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There are 5 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	21	25	first strand
Strand 2	J	72	76	anti-parallel
Strand 3	J	58	62	anti-parallel
Strand 4	J	37	40	anti-parallel
Strand 5	J	47	49	anti-parallel

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There are 2 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	79	82	first strand
Strand 2	J	107	110	parallel

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There are 5 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	21	25	first strand
Strand 2	K	72	76	anti-parallel
Strand 3	K	58	62	anti-parallel
Strand 4	K	37	40	anti-parallel
Strand 5	K	47	49	anti-parallel

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There are 2 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	79	82	first strand
Strand 2	K	107	110	parallel

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There are 5 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	21	25	first strand
Strand 2	L	72	76	anti-parallel
Strand 3	L	60	62	anti-parallel
Strand 4	L	37	40	anti-parallel
Strand 5	L	47	49	anti-parallel

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There are 2 strands in AG5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	79	82	first strand
Strand 2	L	107	110	parallel

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There are 5 strands in AG6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	21	25	first strand
Strand 2	M	72	76	anti-parallel
Strand 3	M	60	62	anti-parallel
Strand 4	M	37	40	anti-parallel
Strand 5	M	47	49	anti-parallel

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There are 2 strands in AG7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	79	82	first strand
Strand 2	M	107	110	parallel

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There are 3 strands in AG8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	21	25	first strand
Strand 2	N	72	76	anti-parallel
Strand 3	N	61	62	anti-parallel

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There are 2 strands in AG9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	38	40	first strand
Strand 2	N	47	49	anti-parallel

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There are 2 strands in AH1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	79	82	first strand
Strand 2	N	107	110	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VII

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VII