Analysis of interatomic Contacts of Structural Units in PDB entry:
7VJK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VJK entry

There is 1 chain in PDB entry 7VJK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 3SER 462
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 7VJK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 6Right-handed 310
Helix 2
AA2
A
34 47Right-handed alpha
Helix 3
AA3
A
58 64Right-handed 310
Helix 4
AA4
A
65 86Right-handed alpha
Helix 5
AA5
A
96 108Right-handed alpha
Helix 6
AA6
A
120 132Right-handed alpha
Helix 7
AA7
A
148 153Right-handed alpha
Helix 8
AA8
A
159 170Right-handed alpha
Helix 9
AA9
A
170 175Right-handed alpha
Helix 10
AB1
A
199 212Right-handed alpha
Helix 11
AB2
A
233 248Right-handed alpha
Helix 12
AB3
A
251 256Right-handed alpha
Helix 13
AB4
A
267 273Right-handed alpha
Helix 14
AB5
A
277 288Right-handed alpha
Helix 15
AB6
A
291 303Right-handed alpha
Helix 16
AB7
A
303 316Right-handed alpha
Helix 17
AB8
A
321 325Right-handed 310
Helix 18
AB9
A
326 335Right-handed alpha
Helix 19
AC1
A
346 353Right-handed alpha
Helix 20
AC2
A
357 371Right-handed alpha
Helix 21
AC3
A
374 388Right-handed alpha
Helix 22
AC4
A
391 407Right-handed alpha
Helix 23
AC5
A
412 425Right-handed alpha
Helix 24
AC6
A
444 450Right-handed alpha
Helix 25
AC7
A
453 461Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 7VJK.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 12first strand
Strand 2
A
138 141anti-parallel
Strand 3
A
113 116parallel
Strand 4
A
21 24parallel
Strand 5
A
51 57parallel
Strand 6
A
90 94parallel
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