Analysis of interatomic Contacts of Structural Units in PDB entry:
7VJS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VJS entry

There is 1 chain in PDB entry 7VJS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 7VJS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 7Right-handed alpha
Helix 2
AA2
A
8 15Right-handed 310
Helix 3
AA3
A
31 45Right-handed alpha
Helix 4
AA4
A
46 50Right-handed 310
Helix 5
AA5
A
76 88Right-handed alpha
Helix 6
AA6
A
174 179Right-handed alpha
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There are 3 sheets in PDB entry 7VJS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 26first strand
Strand 2
A
169 173anti-parallel
Strand 3
A
123 129anti-parallel
Strand 4
A
218 224anti-parallel
Strand 5
A
99 105anti-parallel
Strand 6
A
57 61anti-parallel
Strand 7
A
51 52anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 114first strand
Strand 2
A
181 184anti-parallel
Strand 3
A
133 138anti-parallel
Strand 4
A
160 164anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 191first strand
Strand 2
A
212 214anti-parallel
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