Analysis of interatomic Contacts of Structural Units in PDB entry:
7VJU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VJU entry

There are 5 chains in PDB entry 7VJU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 4	MET 411
B	ILE 2	LEU 154
C	ILE 5	ALA 413
D	MET 1	LEU 154
E	ILE 5	LYS 193

There are 56 helices in PDB entry 7VJU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	22	Right-handed 310
Helix 2	AA2	A	23	34	Right-handed alpha
Helix 3	AA3	A	47	49	Right-handed 310
Helix 4	AA4	A	135	139	Right-handed 310
Helix 5	AA5	A	163	169	Right-handed alpha
Helix 6	AA6	A	169	180	Right-handed alpha
Helix 7	AA7	A	197	206	Right-handed alpha
Helix 8	AA8	A	207	209	Right-handed 310
Helix 9	AA9	A	210	215	Right-handed alpha
Helix 10	AB1	A	216	221	Right-handed alpha
Helix 11	AB2	A	272	277	Right-handed 310
Helix 12	AB3	A	332	343	Right-handed alpha
Helix 13	AB4	A	344	350	Right-handed 310
Helix 14	AB5	A	352	367	Right-handed alpha
Helix 15	AB6	A	388	392	Right-handed 310
Helix 16	AB7	A	393	408	Right-handed alpha
Helix 17	AB8	B	3	20	Right-handed alpha
Helix 18	AB9	B	22	28	Right-handed 310
Helix 19	AC1	B	41	47	Right-handed alpha
Helix 20	AC2	B	57	71	Right-handed alpha
Helix 21	AC3	C	19	22	Right-handed 310
Helix 22	AC4	C	23	34	Right-handed alpha
Helix 23	AC5	C	47	49	Right-handed 310
Helix 24	AC6	C	135	139	Right-handed 310
Helix 25	AC7	C	163	169	Right-handed alpha
Helix 26	AC8	C	169	180	Right-handed alpha
Helix 27	AC9	C	197	207	Right-handed alpha
Helix 28	AD1	C	208	211	Right-handed 310
Helix 29	AD2	C	216	222	Right-handed alpha
Helix 30	AD3	C	272	277	Right-handed 310
Helix 31	AD4	C	332	343	Right-handed alpha
Helix 32	AD5	C	344	350	Right-handed 310
Helix 33	AD6	C	352	367	Right-handed alpha
Helix 34	AD7	C	368	370	Right-handed 310
Helix 35	AD8	C	393	408	Right-handed alpha
Helix 36	AD9	D	3	20	Right-handed alpha
Helix 37	AE1	D	22	28	Right-handed 310
Helix 38	AE2	D	41	47	Right-handed alpha
Helix 39	AE3	D	57	71	Right-handed alpha
Helix 40	AE4	E	19	22	Right-handed 310
Helix 41	AE5	E	23	34	Right-handed alpha
Helix 42	AE6	E	47	49	Right-handed 310
Helix 43	AE7	E	135	139	Right-handed 310
Helix 44	AE8	E	163	169	Right-handed alpha
Helix 45	AE9	E	169	180	Right-handed alpha
Helix 46	AF1	E	197	207	Right-handed alpha
Helix 47	AF2	E	210	215	Right-handed alpha
Helix 48	AF3	E	272	276	Right-handed 310
Helix 49	AF4	E	332	343	Right-handed alpha
Helix 50	AF5	E	344	346	Right-handed 310
Helix 51	AF6	E	352	367	Right-handed alpha
Helix 52	AF7	E	393	408	Right-handed alpha
Helix 53	AF8	F	3	20	Right-handed alpha
Helix 54	AF9	F	22	28	Right-handed 310
Helix 55	AG1	F	41	46	Right-handed alpha
Helix 56	AG2	F	57	71	Right-handed alpha

There are 19 sheets in PDB entry 7VJU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	A	374	376	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	45	first strand
Strand 2	A	152	156	anti-parallel
Strand 3	A	145	149	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	79	first strand
Strand 2	A	63	69	anti-parallel
Strand 3	A	54	60	anti-parallel
Strand 4	A	94	96	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	101	first strand
Strand 2	A	108	109	anti-parallel
Strand 3	A	115	117	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	234	first strand
Strand 2	A	241	245	anti-parallel
Strand 3	A	288	293	anti-parallel
Strand 4	A	297	302	anti-parallel
Strand 5	A	305	313	anti-parallel
Strand 6	A	319	328	anti-parallel
Strand 7	A	184	194	anti-parallel
Strand 8	B	145	147	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	55	first strand
Strand 2	B	30	40	anti-parallel
Strand 3	B	132	141	parallel
Strand 4	B	113	127	anti-parallel
Strand 5	B	95	108	anti-parallel
Strand 6	B	77	83	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	55	first strand
Strand 2	B	30	40	anti-parallel
Strand 3	B	132	141	parallel
Strand 4	B	113	127	anti-parallel
Strand 5	B	95	108	anti-parallel
Strand 6	B	87	91	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	17	first strand
Strand 2	C	374	376	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	45	first strand
Strand 2	C	152	156	anti-parallel
Strand 3	C	143	149	anti-parallel
Strand 4	C	75	79	anti-parallel
Strand 5	C	63	69	anti-parallel
Strand 6	C	54	60	anti-parallel
Strand 7	C	94	96	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	101	first strand
Strand 2	C	108	109	anti-parallel
Strand 3	C	115	117	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	387	388	first strand
Strand 2	C	229	234	anti-parallel
Strand 3	C	241	246	anti-parallel
Strand 4	C	288	293	anti-parallel
Strand 5	C	297	302	anti-parallel
Strand 6	C	305	315	anti-parallel
Strand 7	C	318	328	anti-parallel
Strand 8	C	184	194	anti-parallel
Strand 9	D	145	147	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	55	first strand
Strand 2	D	30	40	anti-parallel
Strand 3	D	131	141	parallel
Strand 4	D	113	128	anti-parallel
Strand 5	D	96	108	anti-parallel
Strand 6	D	77	83	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	55	first strand
Strand 2	D	30	40	anti-parallel
Strand 3	D	131	141	parallel
Strand 4	D	113	128	anti-parallel
Strand 5	D	96	108	anti-parallel
Strand 6	D	87	91	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	17	first strand
Strand 2	E	374	376	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	45	first strand
Strand 2	E	152	156	anti-parallel
Strand 3	E	143	149	anti-parallel
Strand 4	E	75	79	anti-parallel
Strand 5	E	63	69	anti-parallel
Strand 6	E	54	60	anti-parallel
Strand 7	E	94	96	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	101	first strand
Strand 2	E	108	109	anti-parallel
Strand 3	E	115	117	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	232	234	first strand
Strand 2	E	241	245	anti-parallel
Strand 3	E	288	293	anti-parallel
Strand 4	E	297	302	anti-parallel
Strand 5	E	305	313	anti-parallel
Strand 6	E	319	328	anti-parallel
Strand 7	E	184	194	anti-parallel
Strand 8	F	145	147	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	55	first strand
Strand 2	F	30	40	anti-parallel
Strand 3	F	131	141	parallel
Strand 4	F	113	128	anti-parallel
Strand 5	F	96	108	anti-parallel
Strand 6	F	77	83	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	55	first strand
Strand 2	F	30	40	anti-parallel
Strand 3	F	131	141	parallel
Strand 4	F	113	128	anti-parallel
Strand 5	F	96	108	anti-parallel
Strand 6	F	87	91	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VJU

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VJU