Analysis of interatomic Contacts of Structural Units in PDB entry:
7VK9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VK9 entry

There is 1 chain in PDB entry 7VK9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 22LEU 1385
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 7VK9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 46Right-handed 310
Helix 2
AA2
A
78 84Right-handed alpha
Helix 3
AA3
A
87 114Right-handed alpha
Helix 4
AA4
A
116 125Right-handed alpha
Helix 5
AA5
A
141 152Right-handed alpha
Helix 6
AA6
A
154 164Right-handed alpha
Helix 7
AA7
A
170 185Right-handed alpha
Helix 8
AA8
A
195 199Right-handed 310
Helix 9
AA9
A
200 216Right-handed alpha
Helix 10
AB1
A
227 233Right-handed alpha
Helix 11
AB2
A
237 247Right-handed alpha
Helix 12
AB3
A
256 267Right-handed alpha
Helix 13
AB4
A
290 303Right-handed alpha
Helix 14
AB5
A
306 327Right-handed alpha
Helix 15
AB6
A
335 363Right-handed alpha
Helix 16
AB7
A
366 373Right-handed alpha
Helix 17
AB8
A
378 385Right-handed alpha
Helix 18
AB9
A
388 402Right-handed alpha
Helix 19
AC1
A
406 415Right-handed alpha
Helix 20
AC2
A
428 447Right-handed alpha
Helix 21
AC3
A
450 456Right-handed alpha
Helix 22
AC4
A
456 466Right-handed alpha
Helix 23
AC5
A
472 476Right-handed 310
Helix 24
AC6
A
532 545Right-handed alpha
Helix 25
AC7
A
561 572Right-handed alpha
Helix 26
AC8
A
580 586Right-handed alpha
Helix 27
AC9
A
611 622Right-handed alpha
Helix 28
AD1
A
623 629Right-handed alpha
Helix 29
AD2
A
632 646Right-handed alpha
Helix 30
AD3
A
648 657Right-handed alpha
Helix 31
AD4
A
658 660Right-handed 310
Helix 32
AD5
A
664 672Right-handed alpha
Helix 33
AD6
A
683 689Right-handed alpha
Helix 34
AD7
A
698 705Right-handed alpha
Helix 35
AD8
A
712 719Right-handed alpha
Helix 36
AD9
A
723 735Right-handed alpha
Helix 37
AE1
A
739 746Right-handed alpha
Helix 38
AE2
A
750 771Right-handed alpha
Helix 39
AE3
A
789 812Right-handed alpha
Helix 40
AE4
A
814 819Right-handed alpha
Helix 41
AE5
A
822 827Right-handed 310
Helix 42
AE6
A
828 837Right-handed alpha
Helix 43
AE7
A
849 856Right-handed 310
Helix 44
AE8
A
871 873Right-handed 310
Helix 45
AE9
A
880 885Right-handed 310
Helix 46
AF1
A
892 909Right-handed alpha
Helix 47
AF2
A
913 921Right-handed alpha
Helix 48
AF3
A
922 926Right-handed 310
Helix 49
AF4
A
929 942Right-handed alpha
Helix 50
AF5
A
945 960Right-handed alpha
Helix 51
AF6
A
979 990Right-handed alpha
Helix 52
AF7
A
1000 1021Right-handed alpha
Helix 53
AF8
A
1022 1028Right-handed 310
Helix 54
AF9
A
1037 1042Right-handed 310
Helix 55
AG1
A
1046 1050Right-handed 310
Helix 56
AG2
A
1061 1067Right-handed 310
Helix 57
AG3
A
1098 1109Right-handed alpha
Helix 58
AG4
A
1188 1197Right-handed alpha
Helix 59
AG5
A
1197 1204Right-handed alpha
Helix 60
AG6
A
1211 1215Right-handed 310
Helix 61
AG7
A
1227 1229Right-handed 310
Helix 62
AG8
A
1249 1261Right-handed alpha
Helix 63
AG9
A
1268 1282Right-handed alpha
Helix 64
AH1
A
1284 1301Right-handed alpha
Helix 65
AH2
A
1303 1317Right-handed alpha
Helix 66
AH3
A
1321 1337Right-handed alpha
Helix 67
AH4
A
1359 1364Right-handed 310
Helix 68
AH5
A
1383 1385Right-handed 310
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There are 9 sheets in PDB entry 7VK9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
974 977first strand
Strand 2
A
778 783parallel
Strand 3
A
26 31parallel
Strand 4
A
35 41anti-parallel
Strand 5
A
68 72anti-parallel
Strand 6
A
1113 1116parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 53first strand
Strand 2
A
62 66anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
1377 1381parallel
Strand 3
A
1366 1370anti-parallel
Strand 4
A
1222 1225anti-parallel
Strand 5
A
1231 1234anti-parallel
Strand 6
A
1240 1242anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
558 559first strand
Strand 2
A
548 551anti-parallel
Strand 3
A
598 601anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
857 860first strand
Strand 2
A
875 878anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1069 1071first strand
Strand 2
A
1077 1079anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1083 1085first strand
Strand 2
A
1092 1095anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1179 1187first strand
Strand 2
A
1159 1168anti-parallel
Strand 3
A
1216 1218anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1344 1346first strand
Strand 2
A
1349 1351anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il