Analysis of interatomic Contacts of Structural Units in PDB entry:
7VKD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VKD entry

There is 1 chain in PDB entry 7VKD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5LYS 570
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 7VKD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 26Right-handed alpha
Helix 2
AA2
A
45 50Right-handed alpha
Helix 3
AA3
A
88 93Right-handed 310
Helix 4
AA4
A
102 112Right-handed alpha
Helix 5
AA5
A
118 129Right-handed alpha
Helix 6
AA6
A
136 142Right-handed alpha
Helix 7
AA7
A
147 151Right-handed 310
Helix 8
AA8
A
168 181Right-handed alpha
Helix 9
AA9
A
213 219Right-handed alpha
Helix 10
AB1
A
220 223Right-handed 310
Helix 11
AB2
A
280 288Right-handed alpha
Helix 12
AB3
A
292 299Right-handed alpha
Helix 13
AB4
A
340 346Right-handed alpha
Helix 14
AB5
A
348 371Right-handed alpha
Helix 15
AB6
A
376 393Right-handed alpha
Helix 16
AB7
A
446 465Right-handed alpha
Helix 17
AB8
A
468 471Right-handed 310
Helix 18
AB9
A
489 501Right-handed alpha
Helix 19
AC1
A
515 519Right-handed 310
Helix 20
AC2
A
538 542Right-handed 310
Helix 21
AC3
A
549 570Right-handed alpha
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There are 9 sheets in PDB entry 7VKD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 231first strand
Strand 2
A
33 36parallel
Strand 3
A
6 12parallel
Strand 4
A
263 274parallel
Strand 5
A
251 257anti-parallel
Strand 6
A
235 241anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 231first strand
Strand 2
A
33 36parallel
Strand 3
A
6 12parallel
Strand 4
A
263 274parallel
Strand 5
A
534 536parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
80 81anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 132first strand
Strand 2
A
157 159parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 198first strand
Strand 2
A
335 338anti-parallel
Strand 3
A
399 407anti-parallel
Strand 4
A
410 417anti-parallel
Strand 5
A
318 326anti-parallel
Strand 6
A
473 478anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 198first strand
Strand 2
A
335 338anti-parallel
Strand 3
A
399 407anti-parallel
Strand 4
A
410 417anti-parallel
Strand 5
A
318 326anti-parallel
Strand 6
A
502 503anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 205first strand
Strand 2
A
210 211anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 291first strand
Strand 2
A
305 306parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 314first strand
Strand 2
A
424 427anti-parallel
Strand 3
A
438 440anti-parallel
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