Analysis of interatomic Contacts of Structural Units in PDB entry:
7VKE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VKE entry

There are 2 chains in PDB entry 7VKE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 46ILE 300
B
 GLN 1HIS 125
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 7VKE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 74Right-handed alpha
Helix 2
AA2
A
81 94Right-handed alpha
Helix 3
AA3
A
102 105Right-handed 310
Helix 4
AA4
A
106 113Right-handed alpha
Helix 5
AA5
A
128 139Right-handed alpha
Helix 6
AA6
A
144 147Right-handed 310
Helix 7
AA7
A
148 155Right-handed alpha
Helix 8
AA8
A
183 200Right-handed alpha
Helix 9
AA9
A
220 225Right-handed alpha
Helix 10
AB1
A
226 230Right-handed 310
Helix 11
AB2
A
252 255Right-handed 310
Helix 12
AB3
A
256 269Right-handed alpha
Helix 13
AB4
A
280 290Right-handed alpha
Helix 14
AB5
A
293 298Right-handed alpha
Helix 15
AB6
B
28 32Right-handed 310
Helix 16
AB7
B
87 91Right-handed 310
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There are 5 sheets in PDB entry 7VKE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
172 173anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 126first strand
Strand 2
A
202 209parallel
Strand 3
A
235 243parallel
Strand 4
A
272 278parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
68 73anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
118 122parallel
Strand 3
B
92 98anti-parallel
Strand 4
B
34 39anti-parallel
Strand 5
B
46 51anti-parallel
Strand 6
B
58 60anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
118 122parallel
Strand 3
B
92 98anti-parallel
Strand 4
B
113 114anti-parallel
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