Analysis of interatomic Contacts of Structural Units in PDB entry:
7VKJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VKJ entry

There are 8 chains in PDB entry 7VKJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 437	ASN 540
B	PHE 437	ASN 540
C	PHE 437	ASN 540
D	PHE 437	ASN 540
E	PHE 437	LEU 537
F	PHE 437	ASN 540
G	PHE 437	ASN 540
H	PHE 437	ASN 540

There are 32 helices in PDB entry 7VKJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	457	466	Right-handed alpha
Helix 2	AA2	A	467	472	Right-handed 310
Helix 3	AA3	A	497	509	Right-handed alpha
Helix 4	AA4	A	524	533	Right-handed alpha
Helix 5	AA5	B	457	466	Right-handed alpha
Helix 6	AA6	B	467	472	Right-handed 310
Helix 7	AA7	B	497	509	Right-handed alpha
Helix 8	AA8	B	524	533	Right-handed alpha
Helix 9	AA9	C	457	466	Right-handed alpha
Helix 10	AB1	C	467	472	Right-handed 310
Helix 11	AB2	C	497	509	Right-handed alpha
Helix 12	AB3	C	524	533	Right-handed alpha
Helix 13	AB4	D	457	466	Right-handed alpha
Helix 14	AB5	D	467	472	Right-handed 310
Helix 15	AB6	D	497	509	Right-handed alpha
Helix 16	AB7	D	524	533	Right-handed alpha
Helix 17	AB8	E	457	466	Right-handed alpha
Helix 18	AB9	E	467	472	Right-handed 310
Helix 19	AC1	E	497	509	Right-handed alpha
Helix 20	AC2	E	524	533	Right-handed alpha
Helix 21	AC3	F	457	466	Right-handed alpha
Helix 22	AC4	F	467	472	Right-handed 310
Helix 23	AC5	F	497	509	Right-handed alpha
Helix 24	AC6	F	524	533	Right-handed alpha
Helix 25	AC7	G	457	466	Right-handed alpha
Helix 26	AC8	G	467	472	Right-handed 310
Helix 27	AC9	G	497	509	Right-handed alpha
Helix 28	AD1	G	524	533	Right-handed alpha
Helix 29	AD2	H	457	466	Right-handed alpha
Helix 30	AD3	H	467	472	Right-handed 310
Helix 31	AD4	H	497	509	Right-handed alpha
Helix 32	AD5	H	524	533	Right-handed alpha

There are 4 sheets in PDB entry 7VKJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	513	first strand
Strand 2	A	516	523	anti-parallel
Strand 3	A	446	450	anti-parallel
Strand 4	A	487	494	anti-parallel
Strand 5	A	476	481	anti-parallel
Strand 6	D	476	481	anti-parallel
Strand 7	D	487	494	anti-parallel
Strand 8	D	446	450	anti-parallel
Strand 9	D	516	523	anti-parallel
Strand 10	D	511	513	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	513	first strand
Strand 2	B	516	523	anti-parallel
Strand 3	B	446	450	anti-parallel
Strand 4	B	487	494	anti-parallel
Strand 5	B	476	481	anti-parallel
Strand 6	C	476	481	anti-parallel
Strand 7	C	487	494	anti-parallel
Strand 8	C	446	450	anti-parallel
Strand 9	C	516	523	anti-parallel
Strand 10	C	511	513	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	511	513	first strand
Strand 2	E	516	523	anti-parallel
Strand 3	E	446	450	anti-parallel
Strand 4	E	487	494	anti-parallel
Strand 5	E	476	481	anti-parallel
Strand 6	H	476	481	anti-parallel
Strand 7	H	487	494	anti-parallel
Strand 8	H	446	450	anti-parallel
Strand 9	H	516	523	anti-parallel
Strand 10	H	511	513	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	511	513	first strand
Strand 2	F	516	523	anti-parallel
Strand 3	F	446	450	anti-parallel
Strand 4	F	487	494	anti-parallel
Strand 5	F	476	481	anti-parallel
Strand 6	G	476	481	anti-parallel
Strand 7	G	487	494	anti-parallel
Strand 8	G	446	450	anti-parallel
Strand 9	G	516	523	anti-parallel
Strand 10	G	511	513	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VKJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VKJ