Analysis of interatomic Contacts of Structural Units in PDB entry:
7VKK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VKK entry

There are 2 chains in PDB entry 7VKK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 297
B
 ASN 41ARG 287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 7VKK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 28Right-handed alpha
Helix 2
AA2
A
30 38Right-handed alpha
Helix 3
AA3
A
41 61Right-handed alpha
Helix 4
AA4
A
71 86Right-handed alpha
Helix 5
AA5
A
89 108Right-handed alpha
Helix 6
AA6
A
136 141Right-handed 310
Helix 7
AA7
A
162 166Right-handed 310
Helix 8
AA8
A
206 218Right-handed alpha
Helix 9
AA9
A
240 253Right-handed alpha
Helix 10
AB1
A
275 287Right-handed alpha
Helix 11
AB2
B
42 63Right-handed alpha
Helix 12
AB3
B
71 86Right-handed alpha
Helix 13
AB4
B
89 108Right-handed alpha
Helix 14
AB5
B
204 218Right-handed alpha
Helix 15
AB6
B
244 251Right-handed alpha
Helix 16
AB7
B
275 287Right-handed alpha
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There are 4 sheets in PDB entry 7VKK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 160first strand
Strand 2
A
144 150parallel
Strand 3
A
126 131parallel
Strand 4
A
190 195parallel
Strand 5
A
219 230parallel
Strand 6
A
265 272anti-parallel
Strand 7
A
254 260anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 169first strand
Strand 2
A
181 186parallel
Strand 3
A
176 178anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 160first strand
Strand 2
B
144 150parallel
Strand 3
B
126 131parallel
Strand 4
B
190 196parallel
Strand 5
B
219 230parallel
Strand 6
B
265 272anti-parallel
Strand 7
B
254 261anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 169first strand
Strand 2
B
181 186parallel
Strand 3
B
176 178anti-parallel
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