Analysis of interatomic Contacts of Structural Units in PDB entry:
7VKP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VKP entry

There is 1 chain in PDB entry 7VKP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 2ASN 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 7VKP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 53Right-handed alpha
Helix 2
AA2
A
68 79Right-handed alpha
Helix 3
AA3
A
114 120Right-handed 310
Helix 4
AA4
A
121 127Right-handed alpha
Helix 5
AA5
A
128 134Right-handed alpha
Helix 6
AA6
A
145 155Right-handed alpha
Helix 7
AA7
A
171 181Right-handed 310
Helix 8
AA8
A
187 196Right-handed alpha
Helix 9
AA9
A
201 203Right-handed 310
Helix 10
AB1
A
204 215Right-handed alpha
Helix 11
AB2
A
225 227Right-handed 310
Helix 12
AB3
A
253 268Right-handed alpha
Helix 13
AB4
A
271 288Right-handed alpha
Helix 14
AB5
A
298 308Right-handed alpha
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There are 3 sheets in PDB entry 7VKP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 60first strand
Strand 2
A
6 10parallel
Strand 3
A
137 141parallel
Strand 4
A
161 164parallel
Strand 5
A
183 184parallel
Strand 6
A
219 223parallel
Strand 7
A
229 233anti-parallel
Strand 8
A
238 241anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 40first strand
Strand 2
A
14 21anti-parallel
Strand 3
A
96 99parallel
Strand 4
A
110 113anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
87 89parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il