Analysis of interatomic Contacts of Structural Units in PDB entry:
7VL4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VL4 entry

There are 2 chains in PDB entry 7VL4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 6	LYS 716
B	SER 6	LYS 716

There are 58 helices in PDB entry 7VL4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	29	Right-handed 310
Helix 2	AA2	A	30	32	Right-handed 310
Helix 3	AA3	A	33	43	Right-handed alpha
Helix 4	AA4	A	54	58	Right-handed alpha
Helix 5	AA5	A	72	75	Right-handed 310
Helix 6	AA6	A	76	87	Right-handed alpha
Helix 7	AA7	A	103	108	Right-handed 310
Helix 8	AA8	A	109	116	Right-handed alpha
Helix 9	AA9	A	117	121	Right-handed 310
Helix 10	AB1	A	139	160	Right-handed alpha
Helix 11	AB2	A	161	165	Right-handed 310
Helix 12	AB3	A	178	185	Right-handed alpha
Helix 13	AB4	A	190	206	Right-handed alpha
Helix 14	AB5	A	207	216	Right-handed alpha
Helix 15	AB6	A	221	225	Right-handed 310
Helix 16	AB7	A	234	265	Right-handed alpha
Helix 17	AB8	A	286	293	Right-handed alpha
Helix 18	AB9	A	294	301	Right-handed alpha
Helix 19	AC1	A	320	334	Right-handed alpha
Helix 20	AC2	A	356	370	Right-handed alpha
Helix 21	AC3	A	409	430	Right-handed alpha
Helix 22	AC4	A	443	448	Right-handed 310
Helix 23	AC5	A	463	468	Right-handed 310
Helix 24	AC6	A	472	480	Right-handed alpha
Helix 25	AC7	A	484	492	Right-handed alpha
Helix 26	AC8	A	505	509	Right-handed 310
Helix 27	AC9	A	524	537	Right-handed alpha
Helix 28	AD1	A	558	564	Right-handed alpha
Helix 29	AD2	A	634	647	Right-handed alpha
Helix 30	AD3	B	25	29	Right-handed 310
Helix 31	AD4	B	30	32	Right-handed 310
Helix 32	AD5	B	33	43	Right-handed alpha
Helix 33	AD6	B	54	58	Right-handed alpha
Helix 34	AD7	B	72	75	Right-handed 310
Helix 35	AD8	B	76	87	Right-handed alpha
Helix 36	AD9	B	103	108	Right-handed 310
Helix 37	AE1	B	109	116	Right-handed alpha
Helix 38	AE2	B	117	121	Right-handed 310
Helix 39	AE3	B	139	160	Right-handed alpha
Helix 40	AE4	B	161	165	Right-handed 310
Helix 41	AE5	B	178	185	Right-handed alpha
Helix 42	AE6	B	190	206	Right-handed alpha
Helix 43	AE7	B	207	216	Right-handed alpha
Helix 44	AE8	B	221	225	Right-handed 310
Helix 45	AE9	B	234	265	Right-handed alpha
Helix 46	AF1	B	286	293	Right-handed alpha
Helix 47	AF2	B	294	301	Right-handed alpha
Helix 48	AF3	B	320	334	Right-handed alpha
Helix 49	AF4	B	356	370	Right-handed alpha
Helix 50	AF5	B	410	430	Right-handed alpha
Helix 51	AF6	B	443	448	Right-handed 310
Helix 52	AF7	B	463	468	Right-handed 310
Helix 53	AF8	B	472	480	Right-handed alpha
Helix 54	AF9	B	484	492	Right-handed alpha
Helix 55	AG1	B	505	509	Right-handed 310
Helix 56	AG2	B	524	537	Right-handed alpha
Helix 57	AG3	B	558	564	Right-handed alpha
Helix 58	AG4	B	634	647	Right-handed alpha

There are 16 sheets in PDB entry 7VL4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	15	17	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	23	first strand
Strand 2	A	48	52	parallel
Strand 3	A	90	94	parallel
Strand 4	A	168	172	parallel
Strand 5	A	271	276	parallel
Strand 6	A	304	310	parallel
Strand 7	A	341	345	parallel
Strand 8	A	374	378	parallel
Strand 9	A	19	23	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	61	first strand
Strand 2	A	64	65	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	383	384	first strand
Strand 2	A	395	396	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	496	500	first strand
Strand 2	A	438	442	parallel
Strand 3	A	514	519	parallel
Strand 4	A	540	545	parallel
Strand 5	A	621	626	parallel
Strand 6	A	611	618	anti-parallel
Strand 7	A	601	605	anti-parallel
Strand 8	A	576	579	anti-parallel
Strand 9	A	582	586	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	568	572	first strand
Strand 2	A	591	595	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	654	656	first strand
Strand 2	A	684	690	anti-parallel
Strand 3	A	700	704	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	662	667	first strand
Strand 2	A	671	678	anti-parallel
Strand 3	A	708	715	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	15	17	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	23	first strand
Strand 2	B	48	52	parallel
Strand 3	B	90	94	parallel
Strand 4	B	168	172	parallel
Strand 5	B	271	276	parallel
Strand 6	B	304	310	parallel
Strand 7	B	341	345	parallel
Strand 8	B	374	378	parallel
Strand 9	B	19	23	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	61	first strand
Strand 2	B	64	65	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	383	384	first strand
Strand 2	B	395	396	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	496	500	first strand
Strand 2	B	438	442	parallel
Strand 3	B	514	519	parallel
Strand 4	B	540	545	parallel
Strand 5	B	621	626	parallel
Strand 6	B	611	618	anti-parallel
Strand 7	B	601	605	anti-parallel
Strand 8	B	576	579	anti-parallel
Strand 9	B	582	586	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	568	572	first strand
Strand 2	B	591	595	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	656	first strand
Strand 2	B	684	690	anti-parallel
Strand 3	B	701	704	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	662	667	first strand
Strand 2	B	671	678	anti-parallel
Strand 3	B	708	715	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VL4

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VL4