Analysis of interatomic Contacts of Structural Units in PDB entry:
7VLJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VLJ entry

There are 2 chains in PDB entry 7VLJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1MET 330
B
 PRO 338LYS 371
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 7VLJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 25Right-handed alpha
Helix 2
AA2
A
35 48Right-handed alpha
Helix 3
AA3
A
51 63Right-handed alpha
Helix 4
AA4
A
64 67Right-handed 310
Helix 5
AA5
A
68 70Right-handed 310
Helix 6
AA6
A
71 81Right-handed alpha
Helix 7
AA7
A
106 116Right-handed alpha
Helix 8
AA8
A
124 144Right-handed alpha
Helix 9
AA9
A
232 240Right-handed alpha
Helix 10
AB1
A
243 254Right-handed alpha
Helix 11
AB2
A
274 282Right-handed alpha
Helix 12
AB3
A
284 288Right-handed 310
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There are 4 sheets in PDB entry 7VLJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
B
359 365anti-parallel
Strand 3
B
348 353anti-parallel
Strand 4
A
224 230anti-parallel
Strand 5
A
211 217anti-parallel
Strand 6
A
196 207anti-parallel
Strand 7
A
180 181anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
B
359 365anti-parallel
Strand 3
B
348 353anti-parallel
Strand 4
A
224 230anti-parallel
Strand 5
A
211 217anti-parallel
Strand 6
A
196 207anti-parallel
Strand 7
A
256 264anti-parallel
Strand 8
B
342 343parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 123first strand
Strand 2
A
90 100parallel
Strand 3
A
163 174anti-parallel
Strand 4
A
318 330anti-parallel
Strand 5
A
302 314anti-parallel
Strand 6
A
266 273anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 187first strand
Strand 2
A
193 194anti-parallel
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