Analysis of interatomic Contacts of Structural Units in PDB entry:
7VLK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VLK entry

There are 12 chains in PDB entry 7VLK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -1	LEU 305
B	GLY -1	LEU 305
C	GLY 8	LEU 351
D	GLY 8	LEU 351
E	MET 1	ARG 295
F	MET 1	ARG 295
G	GLN 166	SER 521
H	GLN 166	SER 521
I	PRO 40	SER 466
J	PRO 40	SER 466
K	MET 1	ALA 204
L	MET 1	ALA 204

There are168 helices in PDB entry 7VLK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	17	Right-handed alpha
Helix 2	AA2	A	21	36	Right-handed alpha
Helix 3	AA3	A	42	60	Right-handed alpha
Helix 4	AA4	A	62	83	Right-handed alpha
Helix 5	AA5	A	85	116	Right-handed alpha
Helix 6	AA6	A	117	119	Right-handed 310
Helix 7	AA7	A	131	144	Right-handed alpha
Helix 8	AA8	A	159	171	Right-handed alpha
Helix 9	AA9	A	179	181	Right-handed 310
Helix 10	AB1	A	182	187	Right-handed alpha
Helix 11	AB2	A	211	222	Right-handed alpha
Helix 12	AB3	A	231	235	Right-handed 310
Helix 13	AB4	A	247	252	Right-handed alpha
Helix 14	AB5	A	277	281	Right-handed 310
Helix 15	AB6	A	293	304	Right-handed alpha
Helix 16	AB7	B	2	17	Right-handed alpha
Helix 17	AB8	B	21	36	Right-handed alpha
Helix 18	AB9	B	42	60	Right-handed alpha
Helix 19	AC1	B	62	83	Right-handed alpha
Helix 20	AC2	B	85	106	Right-handed alpha
Helix 21	AC3	B	106	116	Right-handed alpha
Helix 22	AC4	B	117	119	Right-handed 310
Helix 23	AC5	B	131	144	Right-handed alpha
Helix 24	AC6	B	159	171	Right-handed alpha
Helix 25	AC7	B	179	181	Right-handed 310
Helix 26	AC8	B	182	188	Right-handed alpha
Helix 27	AC9	B	211	222	Right-handed alpha
Helix 28	AD1	B	231	235	Right-handed 310
Helix 29	AD2	B	247	252	Right-handed alpha
Helix 30	AD3	B	277	281	Right-handed 310
Helix 31	AD4	B	292	304	Right-handed alpha
Helix 32	AD5	C	9	25	Right-handed alpha
Helix 33	AD6	C	30	49	Right-handed alpha
Helix 34	AD7	C	53	72	Right-handed alpha
Helix 35	AD8	C	75	98	Right-handed alpha
Helix 36	AD9	C	108	115	Right-handed alpha
Helix 37	AE1	C	128	146	Right-handed alpha
Helix 38	AE2	C	146	153	Right-handed alpha
Helix 39	AE3	C	171	182	Right-handed alpha
Helix 40	AE4	C	199	210	Right-handed alpha
Helix 41	AE5	C	221	226	Right-handed alpha
Helix 42	AE6	C	227	229	Right-handed 310
Helix 43	AE7	C	250	261	Right-handed alpha
Helix 44	AE8	C	270	274	Right-handed 310
Helix 45	AE9	C	290	294	Right-handed 310
Helix 46	AF1	C	296	304	Right-handed 310
Helix 47	AF2	C	317	321	Right-handed 310
Helix 48	AF3	C	332	334	Right-handed 310
Helix 49	AF4	C	335	344	Right-handed alpha
Helix 50	AF5	C	345	349	Right-handed 310
Helix 51	AF6	D	9	25	Right-handed alpha
Helix 52	AF7	D	30	49	Right-handed alpha
Helix 53	AF8	D	53	72	Right-handed alpha
Helix 54	AF9	D	75	98	Right-handed alpha
Helix 55	AG1	D	108	114	Right-handed alpha
Helix 56	AG2	D	128	146	Right-handed alpha
Helix 57	AG3	D	146	153	Right-handed alpha
Helix 58	AG4	D	171	182	Right-handed alpha
Helix 59	AG5	D	199	210	Right-handed alpha
Helix 60	AG6	D	221	227	Right-handed alpha
Helix 61	AG7	D	250	261	Right-handed alpha
Helix 62	AG8	D	270	274	Right-handed 310
Helix 63	AG9	D	290	294	Right-handed 310
Helix 64	AH1	D	296	304	Right-handed 310
Helix 65	AH2	D	317	321	Right-handed 310
Helix 66	AH3	D	332	334	Right-handed 310
Helix 67	AH4	D	335	344	Right-handed alpha
Helix 68	AH5	D	345	349	Right-handed 310
Helix 69	AH6	E	36	47	Right-handed alpha
Helix 70	AH7	E	62	68	Right-handed alpha
Helix 71	AH8	E	85	93	Right-handed alpha
Helix 72	AH9	E	94	97	Right-handed 310
Helix 73	AI1	E	114	124	Right-handed alpha
Helix 74	AI2	E	174	176	Right-handed 310
Helix 75	AI3	E	184	190	Right-handed alpha
Helix 76	AI4	E	208	218	Right-handed alpha
Helix 77	AI5	E	227	236	Right-handed alpha
Helix 78	AI6	E	277	279	Right-handed 310
Helix 79	AI7	E	280	293	Right-handed alpha
Helix 80	AI8	F	36	47	Right-handed alpha
Helix 81	AI9	F	62	68	Right-handed alpha
Helix 82	AJ1	F	85	93	Right-handed alpha
Helix 83	AJ2	F	94	97	Right-handed 310
Helix 84	AJ3	F	114	124	Right-handed alpha
Helix 85	AJ4	F	184	190	Right-handed alpha
Helix 86	AJ5	F	208	218	Right-handed alpha
Helix 87	AJ6	F	227	236	Right-handed alpha
Helix 88	AJ7	F	277	279	Right-handed 310
Helix 89	AJ8	F	280	292	Right-handed alpha
Helix 90	AJ9	G	177	181	Right-handed 310
Helix 91	AK1	G	191	196	Right-handed 310
Helix 92	AK2	G	204	216	Right-handed alpha
Helix 93	AK3	G	221	240	Right-handed alpha
Helix 94	AK4	G	247	267	Right-handed alpha
Helix 95	AK5	G	270	286	Right-handed alpha
Helix 96	AK6	G	292	325	Right-handed alpha
Helix 97	AK7	G	339	352	Right-handed alpha
Helix 98	AK8	G	368	379	Right-handed alpha
Helix 99	AK9	G	390	395	Right-handed alpha
Helix 100	AL1	G	396	398	Right-handed 310
Helix 101	AL2	G	419	430	Right-handed alpha
Helix 102	AL3	G	439	443	Right-handed 310
Helix 103	AL4	G	459	464	Right-handed 310
Helix 104	AL5	G	475	479	Right-handed 310
Helix 105	AL6	G	493	497	Right-handed 310
Helix 106	AL7	G	508	510	Right-handed 310
Helix 107	AL8	G	511	521	Right-handed alpha
Helix 108	AL9	H	177	181	Right-handed 310
Helix 109	AM1	H	192	196	Right-handed 310
Helix 110	AM2	H	204	216	Right-handed alpha
Helix 111	AM3	H	221	240	Right-handed alpha
Helix 112	AM4	H	247	267	Right-handed alpha
Helix 113	AM5	H	270	286	Right-handed alpha
Helix 114	AM6	H	292	325	Right-handed alpha
Helix 115	AM7	H	339	353	Right-handed alpha
Helix 116	AM8	H	368	379	Right-handed alpha
Helix 117	AM9	H	390	395	Right-handed alpha
Helix 118	AN1	H	396	398	Right-handed 310
Helix 119	AN2	H	419	430	Right-handed alpha
Helix 120	AN3	H	439	443	Right-handed 310
Helix 121	AN4	H	459	464	Right-handed 310
Helix 122	AN5	H	475	479	Right-handed 310
Helix 123	AN6	H	493	497	Right-handed 310
Helix 124	AN7	H	508	510	Right-handed 310
Helix 125	AN8	H	511	521	Right-handed alpha
Helix 126	AN9	I	58	62	Right-handed 310
Helix 127	AO1	I	64	68	Right-handed 310
Helix 128	AO2	I	74	86	Right-handed alpha
Helix 129	AO3	I	98	108	Right-handed alpha
Helix 130	AO4	I	109	113	Right-handed 310
Helix 131	AO5	I	130	142	Right-handed alpha
Helix 132	AO6	I	161	175	Right-handed alpha
Helix 133	AO7	I	229	233	Right-handed 310
Helix 134	AO8	I	253	263	Right-handed alpha
Helix 135	AO9	I	268	279	Right-handed alpha
Helix 136	AP1	I	302	315	Right-handed alpha
Helix 137	AP2	I	322	326	Right-handed 310
Helix 138	AP3	I	330	334	Right-handed 310
Helix 139	AP4	J	58	62	Right-handed 310
Helix 140	AP5	J	64	68	Right-handed 310
Helix 141	AP6	J	74	87	Right-handed alpha
Helix 142	AP7	J	98	108	Right-handed alpha
Helix 143	AP8	J	109	113	Right-handed 310
Helix 144	AP9	J	130	142	Right-handed alpha
Helix 145	AQ1	J	161	175	Right-handed alpha
Helix 146	AQ2	J	228	234	Right-handed alpha
Helix 147	AQ3	J	253	263	Right-handed alpha
Helix 148	AQ4	J	268	279	Right-handed alpha
Helix 149	AQ5	J	302	315	Right-handed alpha
Helix 150	AQ6	J	322	326	Right-handed 310
Helix 151	AQ7	J	330	334	Right-handed 310
Helix 152	AQ8	K	1	3	Right-handed 310
Helix 153	AQ9	K	61	66	Right-handed alpha
Helix 154	AR1	K	90	97	Right-handed alpha
Helix 155	AR2	K	112	119	Right-handed alpha
Helix 156	AR3	K	126	133	Right-handed alpha
Helix 157	AR4	K	142	154	Right-handed alpha
Helix 158	AR5	K	158	177	Right-handed alpha
Helix 159	AR6	K	180	184	Right-handed 310
Helix 160	AR7	K	188	204	Right-handed alpha
Helix 161	AR8	L	1	3	Right-handed 310
Helix 162	AR9	L	61	66	Right-handed alpha
Helix 163	AS1	L	90	98	Right-handed alpha
Helix 164	AS2	L	112	118	Right-handed alpha
Helix 165	AS3	L	126	133	Right-handed alpha
Helix 166	AS4	L	142	154	Right-handed alpha
Helix 167	AS5	L	158	178	Right-handed alpha
Helix 168	AS6	L	188	204	Right-handed alpha

There are 33 sheets in PDB entry 7VLK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	178	first strand
Strand 2	A	148	153	parallel
Strand 3	A	123	126	parallel
Strand 4	A	192	195	parallel
Strand 5	A	226	229	parallel
Strand 6	A	283	286	parallel
Strand 7	A	289	291	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	200	first strand
Strand 2	A	206	209	anti-parallel
Strand 3	A	273	276	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	178	first strand
Strand 2	B	148	153	parallel
Strand 3	B	123	127	parallel
Strand 4	B	192	196	parallel
Strand 5	B	226	229	parallel
Strand 6	B	283	286	parallel
Strand 7	B	289	291	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	200	first strand
Strand 2	B	206	209	anti-parallel
Strand 3	B	273	276	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	329	331	first strand
Strand 2	C	323	326	anti-parallel
Strand 3	C	265	268	parallel
Strand 4	C	231	234	parallel
Strand 5	C	164	168	parallel
Strand 6	C	188	193	parallel
Strand 7	C	213	218	parallel
Strand 8	H	482	484	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	239	first strand
Strand 2	C	245	248	anti-parallel
Strand 3	C	313	316	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	306	308	first strand
Strand 2	H	383	387	parallel
Strand 3	H	357	362	parallel
Strand 4	H	332	336	parallel
Strand 5	H	400	404	parallel
Strand 6	H	434	437	parallel
Strand 7	H	499	502	parallel
Strand 8	H	505	507	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	329	331	first strand
Strand 2	D	323	326	anti-parallel
Strand 3	D	265	268	parallel
Strand 4	D	231	234	parallel
Strand 5	D	164	168	parallel
Strand 6	D	188	193	parallel
Strand 7	D	213	218	parallel
Strand 8	G	482	484	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	239	first strand
Strand 2	D	245	248	anti-parallel
Strand 3	D	313	316	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	306	308	first strand
Strand 2	G	383	387	parallel
Strand 3	G	357	362	parallel
Strand 4	G	332	336	parallel
Strand 5	G	400	404	parallel
Strand 6	G	434	437	parallel
Strand 7	G	499	502	parallel
Strand 8	G	505	507	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	75	79	first strand
Strand 2	E	51	55	parallel
Strand 3	E	4	8	parallel
Strand 4	E	101	105	parallel
Strand 5	E	199	207	anti-parallel
Strand 6	E	128	134	anti-parallel
Strand 7	E	263	268	parallel

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There are 13 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	167	172	first strand
Strand 2	E	156	160	anti-parallel
Strand 3	E	192	196	anti-parallel
Strand 4	I	238	241	anti-parallel
Strand 5	I	201	206	anti-parallel
Strand 6	I	211	217	anti-parallel
Strand 7	I	287	292	anti-parallel
Strand 8	I	181	187	parallel
Strand 9	I	244	251	anti-parallel
Strand 10	I	149	152	anti-parallel
Strand 11	I	44	48	parallel
Strand 12	I	90	95	parallel
Strand 13	I	119	124	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	180	183	first strand
Strand 2	I	223	226	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	75	79	first strand
Strand 2	F	51	55	parallel
Strand 3	F	4	8	parallel
Strand 4	F	101	105	parallel
Strand 5	F	199	207	anti-parallel
Strand 6	F	128	134	anti-parallel
Strand 7	F	263	268	parallel

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There are 13 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	167	172	first strand
Strand 2	F	156	160	anti-parallel
Strand 3	F	192	196	anti-parallel
Strand 4	J	236	241	anti-parallel
Strand 5	J	201	206	anti-parallel
Strand 6	J	211	217	anti-parallel
Strand 7	J	287	292	anti-parallel
Strand 8	J	181	187	parallel
Strand 9	J	244	251	anti-parallel
Strand 10	J	149	152	anti-parallel
Strand 11	J	44	48	parallel
Strand 12	J	90	95	parallel
Strand 13	J	119	124	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	179	183	first strand
Strand 2	J	223	227	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	407	408	first strand
Strand 2	G	414	417	anti-parallel
Strand 3	G	489	492	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	466	467	first strand
Strand 2	G	470	471	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	407	408	first strand
Strand 2	H	414	417	anti-parallel
Strand 3	H	489	492	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	155	157	first strand
Strand 2	I	297	299	anti-parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	336	338	first strand
Strand 2	I	342	344	anti-parallel
Strand 3	I	360	362	parallel
Strand 4	I	378	379	parallel
Strand 5	I	395	396	parallel
Strand 6	I	411	413	parallel
Strand 7	I	429	432	parallel
Strand 8	I	448	450	parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	355	356	first strand
Strand 2	I	373	375	parallel
Strand 3	I	390	392	parallel
Strand 4	I	407	409	parallel
Strand 5	I	423	425	parallel
Strand 6	I	441	442	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	384	385	first strand
Strand 2	I	401	402	parallel
Strand 3	I	418	419	parallel
Strand 4	I	436	437	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	155	157	first strand
Strand 2	J	297	299	anti-parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	336	338	first strand
Strand 2	J	342	344	anti-parallel
Strand 3	J	360	362	parallel
Strand 4	J	378	379	parallel
Strand 5	J	395	396	parallel
Strand 6	J	411	413	parallel
Strand 7	J	429	432	parallel
Strand 8	J	447	450	parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	355	356	first strand
Strand 2	J	373	375	parallel
Strand 3	J	390	392	parallel
Strand 4	J	407	409	parallel
Strand 5	J	423	425	parallel
Strand 6	J	441	442	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	384	385	first strand
Strand 2	J	401	402	parallel
Strand 3	J	418	419	parallel
Strand 4	J	436	437	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	5	13	first strand
Strand 2	K	24	33	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	38	41	first strand
Strand 2	K	44	47	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	52	54	first strand
Strand 2	K	69	71	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	13	first strand
Strand 2	L	24	33	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	38	41	first strand
Strand 2	L	44	47	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	52	54	first strand
Strand 2	L	69	71	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VLK

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VLK