Analysis of interatomic Contacts of Structural Units in PDB entry:
7VLT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VLT entry

There is 1 chain in PDB entry 7VLT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 250MET 1545
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 7VLT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
252 255Right-handed 310
Helix 2
AA2
A
256 278Right-handed alpha
Helix 3
AA3
A
284 312Right-handed alpha
Helix 4
AA4
A
312 327Right-handed alpha
Helix 5
AA5
A
347 395Right-handed alpha
Helix 6
AA6
A
397 402Right-handed alpha
Helix 7
AA7
A
406 427Right-handed alpha
Helix 8
AA8
A
429 450Right-handed alpha
Helix 9
AA9
A
451 462Right-handed alpha
Helix 10
AB1
A
462 498Right-handed alpha
Helix 11
AB2
A
498 506Right-handed alpha
Helix 12
AB3
A
507 559Right-handed alpha
Helix 13
AB4
A
564 584Right-handed alpha
Helix 14
AB5
A
584 607Right-handed alpha
Helix 15
AB6
A
706 715Right-handed alpha
Helix 16
AB7
A
761 768Right-handed alpha
Helix 17
AB8
A
773 784Right-handed alpha
Helix 18
AB9
A
786 791Right-handed alpha
Helix 19
AC1
A
809 824Right-handed alpha
Helix 20
AC2
A
839 849Right-handed alpha
Helix 21
AC3
A
853 859Right-handed alpha
Helix 22
AC4
A
868 874Right-handed 310
Helix 23
AC5
A
891 899Right-handed alpha
Helix 24
AC6
A
899 911Right-handed alpha
Helix 25
AC7
A
976 984Right-handed alpha
Helix 26
AC8
A
988 1016Right-handed alpha
Helix 27
AC9
A
1029 1073Right-handed alpha
Helix 28
AD1
A
1076 1083Right-handed alpha
Helix 29
AD2
A
1084 1102Right-handed alpha
Helix 30
AD3
A
1102 1128Right-handed alpha
Helix 31
AD4
A
1130 1163Right-handed alpha
Helix 32
AD5
A
1163 1176Right-handed alpha
Helix 33
AD6
A
1177 1185Right-handed alpha
Helix 34
AD7
A
1186 1238Right-handed alpha
Helix 35
AD8
A
1242 1280Right-handed alpha
Helix 36
AD9
A
1281 1284Right-handed 310
Helix 37
AE1
A
1347 1355Right-handed alpha
Helix 38
AE2
A
1377 1383Right-handed alpha
Helix 39
AE3
A
1399 1404Right-handed alpha
Helix 40
AE4
A
1410 1421Right-handed alpha
Helix 41
AE5
A
1423 1430Right-handed alpha
Helix 42
AE6
A
1432 1435Right-handed 310
Helix 43
AE7
A
1439 1443Right-handed 310
Helix 44
AE8
A
1446 1462Right-handed alpha
Helix 45
AE9
A
1476 1491Right-handed alpha
Helix 46
AF1
A
1504 1509Right-handed 310
Helix 47
AF2
A
1525 1532Right-handed alpha
Helix 48
AF3
A
1535 1545Right-handed alpha
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There are 5 sheets in PDB entry 7VLT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
682 692first strand
Strand 2
A
666 676anti-parallel
Strand 3
A
720 726anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
748 751first strand
Strand 2
A
828 832parallel
Strand 3
A
861 865parallel
Strand 4
A
696 700parallel
Strand 5
A
877 882parallel
Strand 6
A
885 890anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1325 1332first strand
Strand 2
A
1308 1316anti-parallel
Strand 3
A
1360 1368anti-parallel
Strand 4
A
1371 1372anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1386 1388first strand
Strand 2
A
1465 1469parallel
Strand 3
A
1495 1499parallel
Strand 4
A
1337 1342parallel
Strand 5
A
1511 1516parallel
Strand 6
A
1519 1524anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1397 1398first strand
Strand 2
A
1437 1438anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il