Analysis of interatomic Contacts of Structural Units in PDB entry:
7VM8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VM8 entry

There is 1 chain in PDB entry 7VM8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 348GLY 881
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 7VM8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
358 371Right-handed alpha
Helix 2
AA2
A
372 375Right-handed 310
Helix 3
AA3
A
386 396Right-handed alpha
Helix 4
AA4
A
415 422Right-handed alpha
Helix 5
AA5
A
438 455Right-handed alpha
Helix 6
AA6
A
470 474Right-handed 310
Helix 7
AA7
A
476 481Right-handed alpha
Helix 8
AA8
A
490 504Right-handed alpha
Helix 9
AA9
A
506 514Right-handed alpha
Helix 10
AB1
A
527 531Right-handed 310
Helix 11
AB2
A
534 539Right-handed alpha
Helix 12
AB3
A
620 631Right-handed alpha
Helix 13
AB4
A
644 654Right-handed alpha
Helix 14
AB5
A
676 683Right-handed alpha
Helix 15
AB6
A
702 724Right-handed alpha
Helix 16
AB7
A
764 772Right-handed alpha
Helix 17
AB8
A
783 794Right-handed alpha
Helix 18
AB9
A
796 798Right-handed 310
Helix 19
AC1
A
799 807Right-handed alpha
Helix 20
AC2
A
830 838Right-handed alpha
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There are 5 sheets in PDB entry 7VM8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 410first strand
Strand 2
A
378 383parallel
Strand 3
A
351 354parallel
Strand 4
A
429 432parallel
Strand 5
A
463 468parallel
Strand 6
A
485 489parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 525first strand
Strand 2
A
574 579anti-parallel
Strand 3
A
547 552anti-parallel
Strand 4
A
558 561anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
665 671first strand
Strand 2
A
635 641parallel
Strand 3
A
610 614parallel
Strand 4
A
690 693parallel
Strand 5
A
757 761parallel
Strand 6
A
778 781parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
813 818first strand
Strand 2
A
874 879anti-parallel
Strand 3
A
845 849anti-parallel
Strand 4
A
857 858anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
828 829first strand
Strand 2
A
867 868anti-parallel
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