Analysis of interatomic Contacts of Structural Units in PDB entry:
7VMA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VMA entry

There are 2 chains in PDB entry 7VMA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 620
B	MET 1	LEU 620

There are 38 helices in PDB entry 7VMA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	108	114	Right-handed alpha
Helix 2	AA2	A	115	118	Right-handed 310
Helix 3	AA3	A	200	217	Right-handed alpha
Helix 4	AA4	A	238	249	Right-handed alpha
Helix 5	AA5	A	253	255	Right-handed 310
Helix 6	AA6	A	256	267	Right-handed alpha
Helix 7	AA7	A	290	295	Right-handed alpha
Helix 8	AA8	A	308	325	Right-handed alpha
Helix 9	AA9	A	326	333	Right-handed alpha
Helix 10	AB1	A	333	348	Right-handed alpha
Helix 11	AB2	A	387	403	Right-handed alpha
Helix 12	AB3	A	409	429	Right-handed alpha
Helix 13	AB4	A	449	456	Right-handed 310
Helix 14	AB5	A	463	472	Right-handed alpha
Helix 15	AB6	A	503	517	Right-handed alpha
Helix 16	AB7	A	519	536	Right-handed alpha
Helix 17	AB8	A	537	541	Right-handed 310
Helix 18	AB9	A	562	577	Right-handed alpha
Helix 19	AC1	B	109	113	Right-handed alpha
Helix 20	AC2	B	114	118	Right-handed 310
Helix 21	AC3	B	200	217	Right-handed alpha
Helix 22	AC4	B	238	249	Right-handed alpha
Helix 23	AC5	B	254	267	Right-handed alpha
Helix 24	AC6	B	290	295	Right-handed alpha
Helix 25	AC7	B	308	325	Right-handed alpha
Helix 26	AC8	B	326	333	Right-handed alpha
Helix 27	AC9	B	333	348	Right-handed alpha
Helix 28	AD1	B	349	351	Right-handed 310
Helix 29	AD2	B	387	403	Right-handed alpha
Helix 30	AD3	B	409	429	Right-handed alpha
Helix 31	AD4	B	450	453	Right-handed 310
Helix 32	AD5	B	454	459	Right-handed alpha
Helix 33	AD6	B	463	471	Right-handed alpha
Helix 34	AD7	B	503	517	Right-handed alpha
Helix 35	AD8	B	519	537	Right-handed alpha
Helix 36	AD9	B	538	541	Right-handed 310
Helix 37	AE1	B	562	567	Right-handed alpha
Helix 38	AE2	B	567	577	Right-handed alpha

There are 14 sheets in PDB entry 7VMA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	10	14	anti-parallel
Strand 3	A	26	29	anti-parallel
Strand 4	A	32	43	anti-parallel
Strand 5	A	94	103	anti-parallel
Strand 6	A	154	161	anti-parallel
Strand 7	A	149	151	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	53	first strand
Strand 2	A	57	63	anti-parallel
Strand 3	A	68	76	anti-parallel
Strand 4	A	80	88	anti-parallel
Strand 5	A	166	177	anti-parallel
Strand 6	A	138	146	anti-parallel
Strand 7	A	130	135	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	197	first strand
Strand 2	A	595	602	anti-parallel
Strand 3	A	605	611	anti-parallel
Strand 4	A	615	619	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	220	first strand
Strand 2	A	225	227	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	386	first strand
Strand 2	A	437	438	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	477	478	first strand
Strand 2	A	481	482	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	580	581	first strand
Strand 2	A	585	586	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	10	14	anti-parallel
Strand 3	B	26	29	anti-parallel
Strand 4	B	32	43	anti-parallel
Strand 5	B	107	108	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	10	14	anti-parallel
Strand 3	B	26	29	anti-parallel
Strand 4	B	32	43	anti-parallel
Strand 5	B	94	103	anti-parallel
Strand 6	B	154	161	anti-parallel
Strand 7	B	149	150	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	53	first strand
Strand 2	B	57	64	anti-parallel
Strand 3	B	68	76	anti-parallel
Strand 4	B	80	88	anti-parallel
Strand 5	B	166	177	anti-parallel
Strand 6	B	140	146	anti-parallel
Strand 7	B	130	133	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	197	first strand
Strand 2	B	594	602	anti-parallel
Strand 3	B	605	612	anti-parallel
Strand 4	B	615	619	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	221	first strand
Strand 2	B	224	227	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	385	386	first strand
Strand 2	B	437	438	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	580	581	first strand
Strand 2	B	585	586	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VMA

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VMA