Analysis of interatomic Contacts of Structural Units in PDB entry:
7VMB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VMB entry

There are 3 chains in PDB entry 7VMB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 515LYS 878
B
 SER 113ARG 169
C
 ILE 9LYS 148
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 7VMB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
521 538Right-handed alpha
Helix 2
AA2
A
538 549Right-handed alpha
Helix 3
AA3
A
555 566Right-handed alpha
Helix 4
AA4
A
570 579Right-handed alpha
Helix 5
AA5
A
583 596Right-handed alpha
Helix 6
AA6
A
603 615Right-handed alpha
Helix 7
AA7
A
620 639Right-handed alpha
Helix 8
AA8
A
639 645Right-handed alpha
Helix 9
AA9
A
649 668Right-handed alpha
Helix 10
AB1
A
672 676Right-handed 310
Helix 11
AB2
A
678 686Right-handed alpha
Helix 12
AB3
A
696 710Right-handed alpha
Helix 13
AB4
A
717 731Right-handed alpha
Helix 14
AB5
A
846 876Right-handed alpha
Helix 15
AB6
B
114 128Right-handed alpha
Helix 16
AB7
B
130 159Right-handed alpha
Helix 17
AB8
C
11 20Right-handed alpha
Helix 18
AB9
C
31 37Right-handed alpha
Helix 19
AC1
C
65 74Right-handed alpha
Helix 20
AC2
C
80 93Right-handed alpha
Helix 21
AC3
C
102 112Right-handed alpha
Helix 22
AC4
C
117 129Right-handed alpha
Helix 23
AC5
C
137 146Right-handed alpha
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There are 3 sheets in PDB entry 7VMB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
799 807first strand
Strand 2
A
784 792anti-parallel
Strand 3
A
775 781anti-parallel
Strand 4
A
753 761anti-parallel
Strand 5
A
836 843anti-parallel
Strand 6
A
824 830anti-parallel
Strand 7
A
811 816anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 27first strand
Strand 2
C
63 64anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 101first strand
Strand 2
C
135 136anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il