Analysis of interatomic Contacts of Structural Units in PDB entry:
7VMC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VMC entry

There are 3 chains in PDB entry 7VMC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 10SER 393
B
 THR 175LYS 285
C
 LEU 3GLY 179
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 7VMC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 22Right-handed 310
Helix 2
AA2
A
23 39Right-handed alpha
Helix 3
AA3
A
54 58Right-handed 310
Helix 4
AA4
A
83 93Right-handed alpha
Helix 5
AA5
A
112 126Right-handed alpha
Helix 6
AA6
A
142 160Right-handed alpha
Helix 7
AA7
A
173 179Right-handed alpha
Helix 8
AA8
A
184 199Right-handed alpha
Helix 9
AA9
A
204 208Right-handed 310
Helix 10
AB1
B
178 180Right-handed 310
Helix 11
AB2
B
210 224Right-handed alpha
Helix 12
AB3
B
229 252Right-handed alpha
Helix 13
AB4
C
96 99Right-handed 310
Helix 14
AB5
C
106 111Right-handed 310
Helix 15
AB6
C
167 179Right-handed alpha
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There are 11 sheets in PDB entry 7VMC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 70first strand
Strand 2
A
75 80anti-parallel
Strand 3
A
11 18parallel
Strand 4
A
100 106parallel
Strand 5
A
130 135parallel
Strand 6
A
169 171parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 213first strand
Strand 2
A
291 293anti-parallel
Strand 3
A
241 245anti-parallel
Strand 4
A
251 254anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 220first strand
Strand 2
A
224 230anti-parallel
Strand 3
A
273 277anti-parallel
Strand 4
A
258 260anti-parallel
Strand 5
A
264 265anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 237first strand
Strand 2
A
267 269anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 310first strand
Strand 2
A
355 368anti-parallel
Strand 3
A
336 342anti-parallel
Strand 4
A
329 331anti-parallel
Strand 5
A
373 377anti-parallel
Strand 6
A
382 391anti-parallel
Strand 7
A
299 310anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 323first strand
Strand 2
A
349 350anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 184first strand
Strand 2
B
198 202anti-parallel
Strand 3
B
205 209anti-parallel
Strand 4
B
278 284parallel
Strand 5
B
264 269anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 8first strand
Strand 2
C
92 94anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 18first strand
Strand 2
C
26 28anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 44first strand
Strand 2
C
48 54anti-parallel
Strand 3
C
61 68anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
86 89first strand
Strand 2
C
141 145parallel
Strand 3
C
148 152anti-parallel
Strand 4
C
158 163anti-parallel
Strand 5
C
128 132anti-parallel
Strand 6
C
119 123anti-parallel
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