Analysis of interatomic Contacts of Structural Units in PDB entry:
7VME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VME entry

There is 1 chain in PDB entry 7VME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 28GLU 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 7VME. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 42Right-handed alpha
Helix 2
AA2
A
94 101Right-handed alpha
Helix 3
AA3
A
117 138Right-handed alpha
Helix 4
AA4
A
158 171Right-handed alpha
Helix 5
AA5
A
186 190Right-handed 310
Helix 6
AA6
A
212 220Right-handed alpha
Helix 7
AA7
A
237 241Right-handed 310
Helix 8
AA8
A
245 262Right-handed alpha
Helix 9
AA9
A
264 271Right-handed 310
Helix 10
AB1
A
275 279Right-handed 310
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There are 2 sheets in PDB entry 7VME. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 54first strand
Strand 2
A
64 69anti-parallel
Strand 3
A
105 109anti-parallel
Strand 4
A
76 82parallel
Strand 5
A
147 157parallel
Strand 6
A
175 179parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 201first strand
Strand 2
A
226 231parallel
Strand 3
A
282 287anti-parallel
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