Analysis of interatomic Contacts of Structural Units in PDB entry:
7VMT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VMT entry

There are 6 chains in PDB entry 7VMT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 381	THR 525
B	GLY 381	SER 526
C	GLY 381	THR 525
D	GLY 381	THR 525
E	GLY 381	THR 525
F	GLY 381	SER 526

There are 16 helices in PDB entry 7VMT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	398	404	Right-handed alpha
Helix 2	AA2	A	468	472	Right-handed 310
Helix 3	AA3	A	493	497	Right-handed 310
Helix 4	AA4	B	398	404	Right-handed alpha
Helix 5	AA5	B	465	470	Right-handed alpha
Helix 6	AA6	B	493	497	Right-handed 310
Helix 7	AA7	C	398	404	Right-handed alpha
Helix 8	AA8	C	467	471	Right-handed alpha
Helix 9	AA9	D	398	404	Right-handed alpha
Helix 10	AB1	D	465	471	Right-handed alpha
Helix 11	AB2	D	493	497	Right-handed 310
Helix 12	AB3	E	398	404	Right-handed alpha
Helix 13	AB4	E	465	470	Right-handed alpha
Helix 14	AB5	F	398	404	Right-handed alpha
Helix 15	AB6	F	465	470	Right-handed alpha
Helix 16	AB7	F	493	497	Right-handed 310

There are 12 sheets in PDB entry 7VMT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	389	first strand
Strand 2	A	419	428	anti-parallel
Strand 3	A	499	506	anti-parallel
Strand 4	A	450	456	anti-parallel
Strand 5	A	478	482	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	412	first strand
Strand 2	A	513	523	anti-parallel
Strand 3	A	430	437	anti-parallel
Strand 4	A	487	491	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	385	389	first strand
Strand 2	B	419	428	anti-parallel
Strand 3	B	499	506	anti-parallel
Strand 4	B	450	456	anti-parallel
Strand 5	B	478	482	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	412	first strand
Strand 2	B	513	523	anti-parallel
Strand 3	B	430	437	anti-parallel
Strand 4	B	487	491	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	385	389	first strand
Strand 2	C	419	428	anti-parallel
Strand 3	C	499	506	anti-parallel
Strand 4	C	450	456	anti-parallel
Strand 5	C	478	482	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	412	first strand
Strand 2	C	513	523	anti-parallel
Strand 3	C	430	437	anti-parallel
Strand 4	C	487	491	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	385	389	first strand
Strand 2	D	419	428	anti-parallel
Strand 3	D	499	506	anti-parallel
Strand 4	D	450	456	anti-parallel
Strand 5	D	478	482	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	409	412	first strand
Strand 2	D	513	523	anti-parallel
Strand 3	D	430	437	anti-parallel
Strand 4	D	487	491	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	385	389	first strand
Strand 2	E	419	428	anti-parallel
Strand 3	E	499	506	anti-parallel
Strand 4	E	450	456	anti-parallel
Strand 5	E	478	482	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	409	412	first strand
Strand 2	E	513	523	anti-parallel
Strand 3	E	430	437	anti-parallel
Strand 4	E	487	491	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	385	389	first strand
Strand 2	F	419	428	anti-parallel
Strand 3	F	499	506	anti-parallel
Strand 4	F	450	456	anti-parallel
Strand 5	F	478	482	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	409	412	first strand
Strand 2	F	513	523	anti-parallel
Strand 3	F	430	437	anti-parallel
Strand 4	F	487	491	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VMT

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VMT