Analysis of interatomic Contacts of Structural Units in PDB entry:
7VMV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VMV entry

There are 8 chains in PDB entry 7VMV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 46	LYS 99
B	LEU 18	GLU 180
C	ALA 49	LYS 99
D	THR 17	GLU 169
E	SER 48	LYS 99
F	THR 17	ILE 171
G	GLY 47	LYS 99
H	ALA 3	GLU 173

There are 4 helices in PDB entry 7VMV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	49	54	Right-handed alpha
Helix 2	AA2	D	49	54	Right-handed alpha
Helix 3	AA3	F	49	54	Right-handed alpha
Helix 4	AA4	H	49	54	Right-handed alpha

There are 13 sheets in PDB entry 7VMV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	65	first strand
Strand 2	B	58	59	anti-parallel
Strand 3	A	51	57	parallel
Strand 4	B	21	29	anti-parallel
Strand 5	B	32	42	anti-parallel
Strand 6	B	45	48	anti-parallel
Strand 7	B	76	79	anti-parallel
Strand 8	B	67	71	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	79	first strand
Strand 2	A	84	89	anti-parallel
Strand 3	E	92	98	anti-parallel
Strand 4	B	152	156	anti-parallel
Strand 5	B	162	164	anti-parallel
Strand 6	B	121	126	anti-parallel
Strand 7	B	114	118	anti-parallel
Strand 8	A	74	79	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	93	first strand
Strand 2	E	84	89	anti-parallel
Strand 3	E	74	79	anti-parallel
Strand 4	F	114	118	parallel
Strand 5	F	121	126	anti-parallel
Strand 6	F	161	164	anti-parallel
Strand 7	F	152	155	anti-parallel
Strand 8	A	95	98	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	111	first strand
Strand 2	B	95	99	anti-parallel
Strand 3	B	137	140	anti-parallel
Strand 4	B	146	150	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	59	first strand
Strand 2	C	51	57	parallel
Strand 3	D	21	29	anti-parallel
Strand 4	D	32	42	anti-parallel
Strand 5	D	45	48	anti-parallel
Strand 6	D	76	79	anti-parallel
Strand 7	D	67	71	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	89	first strand
Strand 2	C	74	77	anti-parallel
Strand 3	D	114	118	parallel
Strand 4	D	121	126	anti-parallel
Strand 5	D	161	164	anti-parallel
Strand 6	D	152	155	anti-parallel
Strand 7	G	95	98	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	98	first strand
Strand 2	H	152	156	anti-parallel
Strand 3	H	160	164	anti-parallel
Strand 4	H	122	126	anti-parallel
Strand 5	H	114	117	anti-parallel
Strand 6	G	74	79	parallel
Strand 7	G	84	89	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	111	first strand
Strand 2	D	95	99	anti-parallel
Strand 3	D	137	140	anti-parallel
Strand 4	D	146	150	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	57	first strand
Strand 2	F	21	29	anti-parallel
Strand 3	F	32	42	anti-parallel
Strand 4	F	45	48	anti-parallel
Strand 5	F	76	79	anti-parallel
Strand 6	F	67	71	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	59	first strand
Strand 2	F	64	65	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	106	111	first strand
Strand 2	F	95	100	anti-parallel
Strand 3	F	137	140	anti-parallel
Strand 4	F	146	150	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	64	65	first strand
Strand 2	H	58	59	anti-parallel
Strand 3	G	51	57	parallel
Strand 4	H	21	29	anti-parallel
Strand 5	H	32	42	anti-parallel
Strand 6	H	45	48	anti-parallel
Strand 7	H	76	79	anti-parallel
Strand 8	H	67	71	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	107	111	first strand
Strand 2	H	95	99	anti-parallel
Strand 3	H	137	140	anti-parallel
Strand 4	H	146	150	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VMV

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VMV