Analysis of interatomic Contacts of Structural Units in PDB entry:
7VMW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VMW entry

There are 3 chains in PDB entry 7VMW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 7PRO 302
B
 SER 7GLN 300
C
 GLY 1ILE 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 7VMW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 30Right-handed alpha
Helix 2
AA2
A
37 47Right-handed alpha
Helix 3
AA3
A
77 93Right-handed alpha
Helix 4
AA4
A
102 110Right-handed alpha
Helix 5
AA5
A
114 116Right-handed 310
Helix 6
AA6
A
130 133Right-handed 310
Helix 7
AA7
A
145 157Right-handed alpha
Helix 8
AA8
A
159 165Right-handed alpha
Helix 9
AA9
A
193 197Right-handed alpha
Helix 10
AB1
A
198 206Right-handed alpha
Helix 11
AB2
A
210 215Right-handed alpha
Helix 12
AB3
A
216 218Right-handed 310
Helix 13
AB4
A
242 244Right-handed 310
Helix 14
AB5
A
245 250Right-handed alpha
Helix 15
AB6
A
253 264Right-handed alpha
Helix 16
AB7
A
278 282Right-handed alpha
Helix 17
AB8
B
16 30Right-handed alpha
Helix 18
AB9
B
37 47Right-handed alpha
Helix 19
AC1
B
77 94Right-handed alpha
Helix 20
AC2
B
102 110Right-handed alpha
Helix 21
AC3
B
114 116Right-handed 310
Helix 22
AC4
B
130 133Right-handed 310
Helix 23
AC5
B
145 156Right-handed alpha
Helix 24
AC6
B
159 164Right-handed alpha
Helix 25
AC7
B
198 209Right-handed alpha
Helix 26
AC8
B
210 215Right-handed alpha
Helix 27
AC9
B
216 218Right-handed 310
Helix 28
AD1
B
242 244Right-handed 310
Helix 29
AD2
B
245 250Right-handed alpha
Helix 30
AD3
B
253 265Right-handed alpha
Helix 31
AD4
B
279 283Right-handed 310
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There are 2 sheets in PDB entry 7VMW. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 188first strand
Strand 2
A
171 178anti-parallel
Strand 3
A
135 142anti-parallel
Strand 4
A
118 126anti-parallel
Strand 5
A
63 73anti-parallel
Strand 6
A
51 60anti-parallel
Strand 7
A
288 297anti-parallel
Strand 8
A
272 277anti-parallel
Strand 9
A
235 240anti-parallel
Strand 10
A
220 226anti-parallel
Strand 11
A
190 192anti-parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 187first strand
Strand 2
B
171 178anti-parallel
Strand 3
B
135 142anti-parallel
Strand 4
B
118 126anti-parallel
Strand 5
B
63 73anti-parallel
Strand 6
B
51 60anti-parallel
Strand 7
B
288 297anti-parallel
Strand 8
B
272 277anti-parallel
Strand 9
B
235 240anti-parallel
Strand 10
B
220 225anti-parallel
Strand 11
B
190 192anti-parallel
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