Analysis of interatomic Contacts of Structural Units in PDB entry:
7VMX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VMX entry

There are 2 chains in PDB entry 7VMX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 271
B
 LYS 10LYS 396
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 7VMX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 17Right-handed alpha
Helix 2
AA2
A
19 31Right-handed alpha
Helix 3
AA3
A
33 52Right-handed alpha
Helix 4
AA4
A
53 55Right-handed 310
Helix 5
AA5
A
76 81Right-handed alpha
Helix 6
AA6
A
82 100Right-handed alpha
Helix 7
AA7
A
103 109Right-handed alpha
Helix 8
AA8
A
116 129Right-handed alpha
Helix 9
AA9
A
169 184Right-handed alpha
Helix 10
AB1
A
194 208Right-handed alpha
Helix 11
AB2
A
221 235Right-handed alpha
Helix 12
AB3
A
236 239Right-handed 310
Helix 13
AB4
A
248 257Right-handed alpha
Helix 14
AB5
B
21 23Right-handed 310
Helix 15
AB6
B
24 40Right-handed alpha
Helix 16
AB7
B
86 96Right-handed alpha
Helix 17
AB8
B
117 129Right-handed alpha
Helix 18
AB9
B
139 143Right-handed 310
Helix 19
AC1
B
145 163Right-handed alpha
Helix 20
AC2
B
175 182Right-handed alpha
Helix 21
AC3
B
183 201Right-handed alpha
Helix 22
AC4
B
206 210Right-handed 310
Helix 23
AC5
B
285 289Right-handed 310
Helix 24
AC6
B
315 319Right-handed 310
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There are 6 sheets in PDB entry 7VMX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 65first strand
Strand 2
A
68 74anti-parallel
Strand 3
A
133 139anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 149first strand
Strand 2
A
159 167anti-parallel
Strand 3
A
258 267anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 73first strand
Strand 2
B
78 83anti-parallel
Strand 3
B
12 19parallel
Strand 4
B
103 109parallel
Strand 5
B
133 138parallel
Strand 6
B
171 173parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 268first strand
Strand 2
B
254 263anti-parallel
Strand 3
B
276 281anti-parallel
Strand 4
B
226 232anti-parallel
Strand 5
B
213 222anti-parallel
Strand 6
B
294 296anti-parallel
Strand 7
B
243 247anti-parallel
Strand 8
B
254 263anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 239first strand
Strand 2
B
270 272anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
303 313first strand
Strand 2
B
358 370anti-parallel
Strand 3
B
340 345anti-parallel
Strand 4
B
332 333anti-parallel
Strand 5
B
376 381anti-parallel
Strand 6
B
384 395anti-parallel
Strand 7
B
303 313anti-parallel
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