Analysis of interatomic Contacts of Structural Units in PDB entry:
7VND

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VND entry

There are 3 chains in PDB entry 7VND (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLN 14	ASP 1146
A	GLN 14	ASP 1146
C	GLN 14	CYS 336

There are 73 helices in PDB entry 7VND. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	155	159	Right-handed 310
Helix 2	AA2	B	294	304	Right-handed alpha
Helix 3	AA3	B	367	372	Right-handed alpha
Helix 4	AA4	B	383	389	Right-handed 310
Helix 5	AA5	B	405	410	Right-handed 310
Helix 6	AA6	B	438	443	Right-handed alpha
Helix 7	AA7	B	502	505	Right-handed 310
Helix 8	AA8	B	737	743	Right-handed alpha
Helix 9	AA9	B	746	754	Right-handed alpha
Helix 10	AB1	B	755	757	Right-handed 310
Helix 11	AB2	B	761	783	Right-handed alpha
Helix 12	AB3	B	811	815	Right-handed 310
Helix 13	AB4	B	816	825	Right-handed alpha
Helix 14	AB5	B	866	869	Right-handed 310
Helix 15	AB6	B	870	882	Right-handed alpha
Helix 16	AB7	B	886	891	Right-handed 310
Helix 17	AB8	B	897	910	Right-handed alpha
Helix 18	AB9	B	913	940	Right-handed alpha
Helix 19	AC1	B	945	965	Right-handed alpha
Helix 20	AC2	B	966	968	Right-handed 310
Helix 21	AC3	B	977	984	Right-handed alpha
Helix 22	AC4	B	985	1032	Right-handed alpha
Helix 23	AC5	B	1142	1146	Right-handed 310
Helix 24	AC6	A	294	304	Right-handed alpha
Helix 25	AC7	A	364	369	Right-handed alpha
Helix 26	AC8	A	406	410	Right-handed 310
Helix 27	AC9	A	737	742	Right-handed alpha
Helix 28	AD1	A	746	754	Right-handed alpha
Helix 29	AD2	A	755	757	Right-handed 310
Helix 30	AD3	A	762	782	Right-handed alpha
Helix 31	AD4	A	811	815	Right-handed 310
Helix 32	AD5	A	818	825	Right-handed alpha
Helix 33	AD6	A	866	884	Right-handed alpha
Helix 34	AD7	A	885	891	Right-handed 310
Helix 35	AD8	A	897	908	Right-handed alpha
Helix 36	AD9	A	913	918	Right-handed alpha
Helix 37	AE1	A	919	941	Right-handed alpha
Helix 38	AE2	A	945	965	Right-handed alpha
Helix 39	AE3	A	966	968	Right-handed 310
Helix 40	AE4	A	976	983	Right-handed alpha
Helix 41	AE5	A	985	1033	Right-handed alpha
Helix 42	AE6	A	1142	1146	Right-handed 310
Helix 43	AE7	C	294	304	Right-handed alpha
Helix 44	AE8	C	349	353	Right-handed 310
Helix 45	AE9	C	364	371	Right-handed alpha
Helix 46	AF1	C	383	388	Right-handed 310
Helix 47	AF2	C	405	407	Right-handed 310
Helix 48	AF3	C	416	421	Right-handed alpha
Helix 49	AF4	C	438	443	Right-handed alpha
Helix 50	AF5	C	502	505	Right-handed 310
Helix 51	AF6	C	737	743	Right-handed alpha
Helix 52	AF7	C	746	754	Right-handed alpha
Helix 53	AF8	C	755	757	Right-handed 310
Helix 54	AF9	C	758	773	Right-handed alpha
Helix 55	AG1	C	773	783	Right-handed alpha
Helix 56	AG2	C	816	823	Right-handed alpha
Helix 57	AG3	C	866	882	Right-handed alpha
Helix 58	AG4	C	886	891	Right-handed 310
Helix 59	AG5	C	897	899	Right-handed 310
Helix 60	AG6	C	900	909	Right-handed alpha
Helix 61	AG7	C	913	918	Right-handed alpha
Helix 62	AG8	C	919	940	Right-handed alpha
Helix 63	AG9	C	945	964	Right-handed alpha
Helix 64	AH1	C	965	968	Right-handed 310
Helix 65	AH2	C	977	982	Right-handed alpha
Helix 66	AH3	C	985	1032	Right-handed alpha
Helix 67	AH4	C	1140	1146	Right-handed alpha
Helix 68	AH5	V	60	64	Right-handed 310
Helix 69	AH6	V	86	90	Right-handed 310
Helix 70	AH7	V	98	102	Right-handed 310
Helix 71	AH8	D	26	31	Right-handed 310
Helix 72	AH9	D	61	64	Right-handed 310
Helix 73	AI1	D	99	102	Right-handed 310

There are 54 sheets in PDB entry 7VND. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	31	first strand
Strand 2	B	60	62	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	43	first strand
Strand 2	A	565	566	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	55	first strand
Strand 2	B	271	277	anti-parallel
Strand 3	B	288	290	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	92	first strand
Strand 2	B	191	196	anti-parallel
Strand 3	B	201	206	anti-parallel
Strand 4	B	225	229	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	172	first strand
Strand 2	B	126	130	anti-parallel
Strand 3	B	117	120	anti-parallel
Strand 4	B	101	104	anti-parallel
Strand 5	B	240	242	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	317	first strand
Strand 2	B	594	599	anti-parallel
Strand 3	B	609	613	anti-parallel
Strand 4	B	648	651	anti-parallel
Strand 5	B	642	644	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	355	first strand
Strand 2	B	394	403	anti-parallel
Strand 3	B	507	516	anti-parallel
Strand 4	B	431	437	anti-parallel
Strand 5	B	376	380	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	392	first strand
Strand 2	B	524	525	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	454	first strand
Strand 2	B	492	494	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	542	543	first strand
Strand 2	B	546	547	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	584	586	first strand
Strand 2	B	573	577	anti-parallel
Strand 3	B	565	567	anti-parallel
Strand 4	C	42	43	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	655	first strand
Strand 2	B	693	695	parallel
Strand 3	B	671	673	anti-parallel
Strand 4	B	664	665	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	701	702	first strand
Strand 2	C	787	788	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	719	first strand
Strand 2	B	1059	1078	anti-parallel
Strand 3	B	1047	1056	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	722	728	first strand
Strand 2	B	1059	1078	anti-parallel
Strand 3	B	1094	1097	anti-parallel
Strand 4	B	1102	1105	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	733	736	first strand
Strand 2	B	858	861	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	787	788	first strand
Strand 2	A	701	702	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1081	1082	first strand
Strand 2	B	1133	1134	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1086	1090	first strand
Strand 2	B	1120	1125	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	30	first strand
Strand 2	A	61	64	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	37	first strand
Strand 2	A	222	223	parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	44	first strand
Strand 2	C	565	567	parallel
Strand 3	C	573	577	anti-parallel
Strand 4	C	584	588	anti-parallel
Strand 5	C	546	554	anti-parallel
Strand 6	C	538	543	anti-parallel
Strand 7	C	326	328	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	55	first strand
Strand 2	A	271	279	anti-parallel
Strand 3	A	285	290	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	237	238	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	229	first strand
Strand 2	A	200	208	anti-parallel
Strand 3	A	189	197	anti-parallel
Strand 4	A	90	94	anti-parallel
Strand 5	A	266	268	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	104	first strand
Strand 2	A	240	242	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	121	first strand
Strand 2	A	126	128	anti-parallel
Strand 3	A	170	172	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	133	first strand
Strand 2	A	163	164	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	319	first strand
Strand 2	A	592	599	anti-parallel
Strand 3	A	609	613	anti-parallel
Strand 4	A	648	651	anti-parallel
Strand 5	A	642	644	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	328	first strand
Strand 2	A	538	543	parallel
Strand 3	A	546	554	anti-parallel
Strand 4	A	584	588	anti-parallel
Strand 5	A	575	577	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	379	first strand
Strand 2	A	431	435	anti-parallel
Strand 3	A	513	514	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	654	655	first strand
Strand 2	A	692	694	parallel
Strand 3	A	670	674	anti-parallel
Strand 4	A	664	667	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	712	715	first strand
Strand 2	A	1072	1075	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	720	722	first strand
Strand 2	A	1065	1067	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	725	728	first strand
Strand 2	A	1059	1062	anti-parallel
Strand 3	A	1053	1056	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	787	788	first strand
Strand 2	C	701	702	parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1120	1125	first strand
Strand 2	A	1086	1090	anti-parallel
Strand 3	A	1081	1083	anti-parallel
Strand 4	A	1133	1134	parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1094	1097	first strand
Strand 2	A	1102	1105	anti-parallel
Strand 3	A	1113	1114	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	61	65	anti-parallel
Strand 3	C	265	267	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	55	first strand
Strand 2	C	271	277	anti-parallel
Strand 3	C	288	290	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	94	first strand
Strand 2	C	190	196	anti-parallel
Strand 3	C	200	205	anti-parallel
Strand 4	C	225	230	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	104	first strand
Strand 2	C	240	245	anti-parallel
Strand 3	C	141	143	parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	133	first strand
Strand 2	C	163	172	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	317	first strand
Strand 2	C	594	599	anti-parallel
Strand 3	C	609	613	anti-parallel
Strand 4	C	648	651	anti-parallel
Strand 5	C	642	645	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	356	358	first strand
Strand 2	C	395	403	anti-parallel
Strand 3	C	507	515	anti-parallel
Strand 4	C	431	437	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	654	660	first strand
Strand 2	C	692	697	parallel
Strand 3	C	670	674	anti-parallel
Strand 4	C	664	667	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	728	first strand
Strand 2	C	1059	1077	anti-parallel
Strand 3	C	1047	1055	anti-parallel

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There are 5 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	728	first strand
Strand 2	C	1059	1077	anti-parallel
Strand 3	C	1094	1097	anti-parallel
Strand 4	C	1102	1105	anti-parallel
Strand 5	C	1113	1114	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1081	1082	first strand
Strand 2	C	1133	1134	parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1088	1090	first strand
Strand 2	C	1120	1122	anti-parallel

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There are 3 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	19	22	first strand
Strand 2	V	77	81	anti-parallel
Strand 3	V	68	72	anti-parallel

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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	35	39	first strand
Strand 2	V	92	96	anti-parallel

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There are 3 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	23	first strand
Strand 2	D	77	81	anti-parallel
Strand 3	D	68	71	anti-parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	59	first strand
Strand 2	D	49	51	anti-parallel
Strand 3	D	34	39	anti-parallel
Strand 4	D	92	97	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VND

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VND