Analysis of interatomic Contacts of Structural Units in PDB entry:
7VNE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VNE entry

There are 3 chains in PDB entry 7VNE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLN 14	ASP 1146
W	VAL 2	SER 117
A	GLN 14	CYS 336

There are 68 helices in PDB entry 7VNE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	294	304	Right-handed alpha
Helix 2	AA2	C	338	343	Right-handed alpha
Helix 3	AA3	C	364	369	Right-handed alpha
Helix 4	AA4	C	406	410	Right-handed 310
Helix 5	AA5	C	502	505	Right-handed 310
Helix 6	AA6	C	616	620	Right-handed 310
Helix 7	AA7	C	737	743	Right-handed alpha
Helix 8	AA8	C	746	751	Right-handed alpha
Helix 9	AA9	C	753	757	Right-handed 310
Helix 10	AB1	C	758	783	Right-handed alpha
Helix 11	AB2	C	816	825	Right-handed alpha
Helix 12	AB3	C	866	882	Right-handed alpha
Helix 13	AB4	C	886	891	Right-handed 310
Helix 14	AB5	C	897	908	Right-handed alpha
Helix 15	AB6	C	913	918	Right-handed alpha
Helix 16	AB7	C	919	940	Right-handed alpha
Helix 17	AB8	C	945	964	Right-handed alpha
Helix 18	AB9	C	965	968	Right-handed 310
Helix 19	AC1	C	976	984	Right-handed alpha
Helix 20	AC2	C	985	1032	Right-handed alpha
Helix 21	AC3	C	1140	1146	Right-handed alpha
Helix 22	AC4	W	26	31	Right-handed alpha
Helix 23	AC5	W	101	105	Right-handed 310
Helix 24	AC6	A	294	304	Right-handed alpha
Helix 25	AC7	A	338	343	Right-handed alpha
Helix 26	AC8	A	364	372	Right-handed alpha
Helix 27	AC9	A	616	620	Right-handed 310
Helix 28	AD1	A	738	743	Right-handed alpha
Helix 29	AD2	A	746	754	Right-handed alpha
Helix 30	AD3	A	755	757	Right-handed 310
Helix 31	AD4	A	758	783	Right-handed alpha
Helix 32	AD5	A	816	825	Right-handed alpha
Helix 33	AD6	A	866	882	Right-handed alpha
Helix 34	AD7	A	897	909	Right-handed alpha
Helix 35	AD8	A	913	919	Right-handed alpha
Helix 36	AD9	A	919	940	Right-handed alpha
Helix 37	AE1	A	945	964	Right-handed alpha
Helix 38	AE2	A	965	968	Right-handed 310
Helix 39	AE3	A	976	983	Right-handed alpha
Helix 40	AE4	A	985	1033	Right-handed alpha
Helix 41	AE5	A	1140	1146	Right-handed alpha
Helix 42	AE6	U	60	64	Right-handed 310
Helix 43	AE7	B	121	125	Right-handed 310
Helix 44	AE8	B	294	304	Right-handed alpha
Helix 45	AE9	B	338	343	Right-handed alpha
Helix 46	AF1	B	366	370	Right-handed 310
Helix 47	AF2	B	405	410	Right-handed alpha
Helix 48	AF3	B	616	620	Right-handed 310
Helix 49	AF4	B	737	743	Right-handed alpha
Helix 50	AF5	B	746	754	Right-handed alpha
Helix 51	AF6	B	758	768	Right-handed alpha
Helix 52	AF7	B	768	783	Right-handed alpha
Helix 53	AF8	B	816	822	Right-handed alpha
Helix 54	AF9	B	866	882	Right-handed alpha
Helix 55	AG1	B	886	891	Right-handed 310
Helix 56	AG2	B	897	908	Right-handed alpha
Helix 57	AG3	B	913	919	Right-handed alpha
Helix 58	AG4	B	919	940	Right-handed alpha
Helix 59	AG5	B	945	965	Right-handed alpha
Helix 60	AG6	B	966	968	Right-handed 310
Helix 61	AG7	B	985	1001	Right-handed alpha
Helix 62	AG8	B	1004	1022	Right-handed alpha
Helix 63	AG9	B	1024	1032	Right-handed alpha
Helix 64	AH1	B	1141	1146	Right-handed alpha
Helix 65	AH2	V	27	31	Right-handed 310
Helix 66	AH3	V	60	64	Right-handed 310
Helix 67	AH4	V	86	90	Right-handed 310
Helix 68	AH5	V	98	102	Right-handed 310

There are 52 sheets in PDB entry 7VNE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	61	66	anti-parallel
Strand 3	C	264	267	anti-parallel
Strand 4	C	92	94	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	37	first strand
Strand 2	C	222	223	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	B	565	567	parallel
Strand 3	B	573	578	anti-parallel
Strand 4	B	583	588	anti-parallel
Strand 5	B	546	554	anti-parallel
Strand 6	B	538	543	anti-parallel
Strand 7	B	326	328	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	55	first strand
Strand 2	C	271	278	anti-parallel
Strand 3	C	288	290	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	116	first strand
Strand 2	C	131	132	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	120	first strand
Strand 2	C	127	128	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	195	197	first strand
Strand 2	C	200	204	anti-parallel
Strand 3	C	225	230	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	317	first strand
Strand 2	C	594	599	anti-parallel
Strand 3	C	609	613	anti-parallel
Strand 4	C	648	651	anti-parallel
Strand 5	C	642	645	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	358	359	first strand
Strand 2	C	394	403	anti-parallel
Strand 3	C	507	515	anti-parallel
Strand 4	C	431	437	anti-parallel
Strand 5	C	378	380	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	538	543	first strand
Strand 2	C	546	554	anti-parallel
Strand 3	C	584	588	anti-parallel
Strand 4	C	573	577	anti-parallel
Strand 5	C	565	567	anti-parallel
Strand 6	A	42	43	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	654	655	first strand
Strand 2	C	692	694	parallel
Strand 3	C	670	674	anti-parallel
Strand 4	C	664	667	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	701	704	first strand
Strand 2	A	787	790	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	728	first strand
Strand 2	C	1059	1078	anti-parallel
Strand 3	C	1047	1056	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	728	first strand
Strand 2	C	1059	1078	anti-parallel
Strand 3	C	1094	1097	anti-parallel
Strand 4	C	1102	1106	anti-parallel
Strand 5	C	1109	1113	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	735	736	first strand
Strand 2	C	858	859	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	787	789	first strand
Strand 2	B	701	703	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1120	1122	first strand
Strand 2	C	1086	1090	anti-parallel
Strand 3	C	1081	1083	anti-parallel
Strand 4	C	1133	1134	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	6	8	first strand
Strand 2	W	20	22	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	31	first strand
Strand 2	A	60	65	anti-parallel
Strand 3	A	265	269	anti-parallel
Strand 4	A	89	94	anti-parallel
Strand 5	A	189	196	anti-parallel
Strand 6	A	201	208	anti-parallel
Strand 7	A	225	229	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	37	first strand
Strand 2	A	222	223	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	55	first strand
Strand 2	A	271	279	anti-parallel
Strand 3	A	285	290	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	237	238	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	120	first strand
Strand 2	A	126	135	anti-parallel
Strand 3	A	160	172	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	319	first strand
Strand 2	A	592	599	anti-parallel
Strand 3	A	609	613	anti-parallel
Strand 4	A	648	651	anti-parallel
Strand 5	A	642	645	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	380	first strand
Strand 2	A	431	437	anti-parallel
Strand 3	A	507	515	anti-parallel
Strand 4	A	395	403	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	543	first strand
Strand 2	A	546	554	anti-parallel
Strand 3	A	584	588	anti-parallel
Strand 4	A	573	577	anti-parallel
Strand 5	A	565	567	anti-parallel
Strand 6	B	42	43	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	653	655	first strand
Strand 2	A	692	694	parallel
Strand 3	A	670	674	anti-parallel
Strand 4	A	664	667	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	701	702	first strand
Strand 2	B	787	788	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	712	728	first strand
Strand 2	A	1059	1078	anti-parallel
Strand 3	A	1047	1056	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	712	728	first strand
Strand 2	A	1059	1078	anti-parallel
Strand 3	A	1094	1097	anti-parallel
Strand 4	A	1102	1105	anti-parallel
Strand 5	A	1113	1114	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	733	736	first strand
Strand 2	A	858	861	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1120	1122	first strand
Strand 2	A	1086	1090	anti-parallel
Strand 3	A	1081	1083	anti-parallel
Strand 4	A	1133	1134	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	46	51	first strand
Strand 2	U	34	39	anti-parallel
Strand 3	U	92	96	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	67	68	first strand
Strand 2	U	81	82	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	31	first strand
Strand 2	B	60	64	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	37	first strand
Strand 2	B	222	223	parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	55	first strand
Strand 2	B	271	279	anti-parallel
Strand 3	B	285	290	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	237	238	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	229	first strand
Strand 2	B	200	208	anti-parallel
Strand 3	B	189	197	anti-parallel
Strand 4	B	90	94	anti-parallel
Strand 5	B	265	266	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	116	first strand
Strand 2	B	126	132	anti-parallel
Strand 3	B	119	120	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	116	first strand
Strand 2	B	126	132	anti-parallel
Strand 3	B	164	172	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	153	first strand
Strand 2	B	142	145	anti-parallel
Strand 3	B	244	245	parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	319	first strand
Strand 2	B	592	599	anti-parallel
Strand 3	B	609	613	anti-parallel
Strand 4	B	648	651	anti-parallel
Strand 5	B	642	645	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	378	380	first strand
Strand 2	B	431	435	anti-parallel
Strand 3	B	507	512	anti-parallel
Strand 4	B	399	403	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	655	first strand
Strand 2	B	692	694	parallel
Strand 3	B	670	674	anti-parallel
Strand 4	B	664	667	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	715	728	first strand
Strand 2	B	1059	1072	anti-parallel
Strand 3	B	1047	1050	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	715	728	first strand
Strand 2	B	1059	1072	anti-parallel
Strand 3	B	1053	1056	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	733	736	first strand
Strand 2	B	858	861	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1076	1078	first strand
Strand 2	B	1094	1097	anti-parallel
Strand 3	B	1102	1105	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1120	1122	first strand
Strand 2	B	1086	1090	anti-parallel
Strand 3	B	1081	1083	anti-parallel
Strand 4	B	1133	1134	parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	5	8	first strand
Strand 2	V	19	23	anti-parallel
Strand 3	V	78	82	anti-parallel
Strand 4	V	67	71	anti-parallel

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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	91	92	first strand
Strand 2	V	113	114	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VNE

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VNE