Analysis of interatomic Contacts of Structural Units in PDB entry:
7VNI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VNI entry

There are 4 chains in PDB entry 7VNI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASN 269ARG 381
D
 THR 361VAL 464
A
 LYS 267ARG 381
C
 GLU 362VAL 464
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 7VNI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
285 293Right-handed alpha
Helix 2
AA2
B
312 327Right-handed alpha
Helix 3
AA3
B
370 379Right-handed alpha
Helix 4
AA4
D
379 385Right-handed alpha
Helix 5
AA5
D
387 392Right-handed alpha
Helix 6
AA6
D
395 400Right-handed 310
Helix 7
AA7
D
401 403Right-handed 310
Helix 8
AA8
D
404 418Right-handed alpha
Helix 9
AA9
A
285 293Right-handed alpha
Helix 10
AB1
A
295 301Right-handed alpha
Helix 11
AB2
A
312 327Right-handed alpha
Helix 12
AB3
A
370 379Right-handed alpha
Helix 13
AB4
C
379 385Right-handed alpha
Helix 14
AB5
C
387 392Right-handed alpha
Helix 15
AB6
C
395 400Right-handed 310
Helix 16
AB7
C
404 418Right-handed alpha
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There are 4 sheets in PDB entry 7VNI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
281 284first strand
Strand 2
B
270 275anti-parallel
Strand 3
B
358 369anti-parallel
Strand 4
B
343 355anti-parallel
Strand 5
B
328 337anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
373 376first strand
Strand 2
D
362 367anti-parallel
Strand 3
D
454 463anti-parallel
Strand 4
D
436 447anti-parallel
Strand 5
D
423 430anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 284first strand
Strand 2
A
270 275anti-parallel
Strand 3
A
358 369anti-parallel
Strand 4
A
343 355anti-parallel
Strand 5
A
328 337anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
373 376first strand
Strand 2
C
363 367anti-parallel
Strand 3
C
454 463anti-parallel
Strand 4
C
436 447anti-parallel
Strand 5
C
423 430anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il