Analysis of interatomic Contacts of Structural Units in PDB entry:
7VNM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VNM entry

There are 30 chains in PDB entry 7VNM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	ALA 1	GLY 281
M	GLU 2	LEU 306
H	MET 1	LYS 247
A	MET 1	VAL 54
B	SER 5	PHE 49
D	MET 1	VAL 54
E	LEU 7	PHE 49
F	MET 1	VAL 54
G	LEU 7	PHE 49
I	MET 1	VAL 54
J	LEU 7	PHE 49
K	MET 1	VAL 54
N	LEU 7	PHE 49
O	MET 1	VAL 54
P	LEU 7	PHE 49
Q	MET 1	VAL 54
R	LEU 7	PHE 49
S	MET 1	VAL 54
T	LEU 7	PHE 49
U	MET 1	VAL 54
V	THR 10	PHE 49
W	MET 1	VAL 54
C	LEU 12	PHE 49
7	MET 1	ILE 46
8	ASP 6	PHE 49
9	MET 1	VAL 54
0	ASP 6	PHE 49
X	LYS 16	ILE 67
1	ASP 12	VAL 54
2	GLN 18	PHE 49

There are 92 helices in PDB entry 7VNM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	L	6	10	Right-handed 310
Helix 2	AA2	L	32	57	Right-handed alpha
Helix 3	AA3	L	70	74	Right-handed 310
Helix 4	AA4	L	83	112	Right-handed alpha
Helix 5	AA5	L	115	133	Right-handed alpha
Helix 6	AA6	L	133	140	Right-handed alpha
Helix 7	AA7	L	141	145	Right-handed 310
Helix 8	AA8	L	151	164	Right-handed alpha
Helix 9	AA9	L	170	199	Right-handed alpha
Helix 10	AB1	L	208	221	Right-handed alpha
Helix 11	AB2	L	225	250	Right-handed alpha
Helix 12	AB3	L	258	263	Right-handed alpha
Helix 13	AB4	L	263	268	Right-handed alpha
Helix 14	AB5	M	25	29	Right-handed 310
Helix 15	AB6	M	36	43	Right-handed alpha
Helix 16	AB7	M	53	78	Right-handed alpha
Helix 17	AB8	M	81	89	Right-handed alpha
Helix 18	AB9	M	98	102	Right-handed 310
Helix 19	AC1	M	112	140	Right-handed alpha
Helix 20	AC2	M	144	162	Right-handed alpha
Helix 21	AC3	M	162	169	Right-handed alpha
Helix 22	AC4	M	170	174	Right-handed 310
Helix 23	AC5	M	178	193	Right-handed alpha
Helix 24	AC6	M	195	198	Right-handed 310
Helix 25	AC7	M	199	226	Right-handed alpha
Helix 26	AC8	M	227	230	Right-handed 310
Helix 27	AC9	M	233	240	Right-handed alpha
Helix 28	AD1	M	242	257	Right-handed alpha
Helix 29	AD2	M	263	287	Right-handed alpha
Helix 30	AD3	M	293	301	Right-handed alpha
Helix 31	AD4	H	11	36	Right-handed alpha
Helix 32	AD5	H	67	70	Right-handed 310
Helix 33	AD6	H	103	108	Right-handed alpha
Helix 34	AD7	H	109	113	Right-handed 310
Helix 35	AD8	H	194	196	Right-handed 310
Helix 36	AD9	H	209	216	Right-handed 310
Helix 37	AE1	H	226	244	Right-handed alpha
Helix 38	AE2	A	3	5	Right-handed 310
Helix 39	AE3	A	6	11	Right-handed alpha
Helix 40	AE4	A	12	38	Right-handed alpha
Helix 41	AE5	A	42	51	Right-handed alpha
Helix 42	AE6	B	13	46	Right-handed alpha
Helix 43	AE7	D	3	5	Right-handed 310
Helix 44	AE8	D	6	11	Right-handed alpha
Helix 45	AE9	D	12	38	Right-handed alpha
Helix 46	AF1	D	42	51	Right-handed alpha
Helix 47	AF2	E	13	46	Right-handed alpha
Helix 48	AF3	F	3	10	Right-handed 310
Helix 49	AF4	F	12	38	Right-handed alpha
Helix 50	AF5	F	42	51	Right-handed alpha
Helix 51	AF6	G	13	46	Right-handed alpha
Helix 52	AF7	I	3	10	Right-handed 310
Helix 53	AF8	I	12	37	Right-handed alpha
Helix 54	AF9	I	42	51	Right-handed alpha
Helix 55	AG1	J	13	46	Right-handed alpha
Helix 56	AG2	K	3	5	Right-handed 310
Helix 57	AG3	K	6	11	Right-handed alpha
Helix 58	AG4	K	12	38	Right-handed alpha
Helix 59	AG5	K	42	51	Right-handed alpha
Helix 60	AG6	N	13	46	Right-handed alpha
Helix 61	AG7	O	3	10	Right-handed 310
Helix 62	AG8	O	12	38	Right-handed alpha
Helix 63	AG9	O	42	51	Right-handed alpha
Helix 64	AH1	P	13	46	Right-handed alpha
Helix 65	AH2	Q	3	10	Right-handed 310
Helix 66	AH3	Q	12	38	Right-handed alpha
Helix 67	AH4	Q	42	51	Right-handed alpha
Helix 68	AH5	R	13	46	Right-handed alpha
Helix 69	AH6	S	3	10	Right-handed 310
Helix 70	AH7	S	12	38	Right-handed alpha
Helix 71	AH8	S	42	51	Right-handed alpha
Helix 72	AH9	T	13	46	Right-handed alpha
Helix 73	AI1	U	3	5	Right-handed 310
Helix 74	AI2	U	6	11	Right-handed alpha
Helix 75	AI3	U	12	38	Right-handed alpha
Helix 76	AI4	U	42	52	Right-handed alpha
Helix 77	AI5	V	13	46	Right-handed alpha
Helix 78	AI6	W	3	10	Right-handed 310
Helix 79	AI7	W	12	38	Right-handed alpha
Helix 80	AI8	W	42	52	Right-handed alpha
Helix 81	AI9	C	13	46	Right-handed alpha
Helix 82	AJ1	7	3	10	Right-handed 310
Helix 83	AJ2	7	12	38	Right-handed alpha
Helix 84	AJ3	8	13	46	Right-handed alpha
Helix 85	AJ4	9	3	10	Right-handed 310
Helix 86	AJ5	9	12	38	Right-handed alpha
Helix 87	AJ6	9	42	51	Right-handed alpha
Helix 88	AJ7	0	13	46	Right-handed alpha
Helix 89	AJ8	X	17	54	Right-handed alpha
Helix 90	AJ9	1	13	38	Right-handed alpha
Helix 91	AK1	1	42	51	Right-handed alpha
Helix 92	AK2	2	19	46	Right-handed alpha

There are 7 sheets in PDB entry 7VNM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	24	26	first strand
Strand 2	L	29	31	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	65	66	first strand
Strand 2	L	148	149	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	12	13	first strand
Strand 2	H	141	142	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	62	66	first strand
Strand 2	H	71	75	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	87	89	first strand
Strand 2	H	98	100	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	131	133	first strand
Strand 2	H	160	170	anti-parallel
Strand 3	H	175	182	anti-parallel
Strand 4	H	188	192	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	131	133	first strand
Strand 2	H	160	170	anti-parallel
Strand 3	H	152	154	anti-parallel
Strand 4	H	203	204	parallel
Strand 5	H	197	198	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VNM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VNM